Experiment: without_iron3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22935 and AMB_RS22940 are separated by 31 nucleotides AMB_RS22940 and AMB_RS23675 are separated by 178 nucleotides AMB_RS23675 and AMB_RS22950 are separated by 69 nucleotides AMB_RS22950 and AMB_RS22955 overlap by 1 nucleotides
AMB_RS22935: AMB_RS22935 - imidazole glycerol phosphate synthase subunit HisH, at 4,944,234 to 4,944,884
_RS22935
AMB_RS22940: AMB_RS22940 - imidazoleglycerol-phosphate dehydratase, at 4,944,916 to 4,945,515
_RS22940
AMB_RS23675: AMB_RS23675 - Zn-dependent protease with chaperone function, at 4,945,694 to 4,946,815
_RS23675
AMB_RS22950: AMB_RS22950 - HslU--HslV peptidase proteolytic subunit, at 4,946,885 to 4,947,433
_RS22950
AMB_RS22955: AMB_RS22955 - ATP-dependent protease ATPase subunit HslU, at 4,947,433 to 4,948,761
_RS22955
Position (kb) 4945
4946
4947 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4945.606 kb on + strand at 4945.647 kb on + strand at 4945.647 kb on + strand at 4945.814 kb on + strand, within AMB_RS23675 at 4945.814 kb on + strand, within AMB_RS23675 at 4945.815 kb on - strand, within AMB_RS23675 at 4945.815 kb on - strand, within AMB_RS23675 at 4945.815 kb on - strand, within AMB_RS23675 at 4945.941 kb on + strand, within AMB_RS23675 at 4945.941 kb on + strand, within AMB_RS23675 at 4945.941 kb on + strand, within AMB_RS23675 at 4945.941 kb on + strand, within AMB_RS23675 at 4945.942 kb on - strand, within AMB_RS23675 at 4945.942 kb on - strand, within AMB_RS23675 at 4945.992 kb on - strand, within AMB_RS23675 at 4945.992 kb on - strand, within AMB_RS23675 at 4946.155 kb on + strand, within AMB_RS23675 at 4946.168 kb on - strand, within AMB_RS23675 at 4946.489 kb on + strand, within AMB_RS23675 at 4946.490 kb on - strand, within AMB_RS23675 at 4946.525 kb on - strand, within AMB_RS23675 at 4946.558 kb on + strand, within AMB_RS23675 at 4946.558 kb on + strand, within AMB_RS23675 at 4946.558 kb on + strand, within AMB_RS23675 at 4946.558 kb on + strand, within AMB_RS23675 at 4946.558 kb on + strand, within AMB_RS23675 at 4946.570 kb on + strand, within AMB_RS23675 at 4946.598 kb on + strand, within AMB_RS23675 at 4946.598 kb on + strand, within AMB_RS23675 at 4946.599 kb on - strand, within AMB_RS23675 at 4946.599 kb on - strand, within AMB_RS23675 at 4946.599 kb on - strand, within AMB_RS23675 at 4946.849 kb on + strand at 4946.849 kb on + strand at 4946.849 kb on + strand at 4946.850 kb on - strand at 4946.850 kb on - strand at 4946.850 kb on - strand at 4946.850 kb on - strand at 4946.850 kb on - strand at 4947.299 kb on + strand, within AMB_RS22950 at 4947.300 kb on - strand, within AMB_RS22950 at 4947.377 kb on - strand, within AMB_RS22950 at 4947.594 kb on + strand, within AMB_RS22955 at 4947.594 kb on + strand, within AMB_RS22955 at 4947.595 kb on - strand, within AMB_RS22955 at 4947.595 kb on - strand, within AMB_RS22955 at 4947.709 kb on + strand, within AMB_RS22955 at 4947.710 kb on - strand, within AMB_RS22955 at 4947.710 kb on - strand, within AMB_RS22955 at 4947.710 kb on - strand, within AMB_RS22955
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron3 remove 4,945,606 + -0.6 4,945,647 + +3.0 4,945,647 + -0.2 4,945,814 + AMB_RS23675 0.11 +0.0 4,945,814 + AMB_RS23675 0.11 -0.0 4,945,815 - AMB_RS23675 0.11 +0.1 4,945,815 - AMB_RS23675 0.11 +0.2 4,945,815 - AMB_RS23675 0.11 +0.2 4,945,941 + AMB_RS23675 0.22 +0.4 4,945,941 + AMB_RS23675 0.22 -0.2 4,945,941 + AMB_RS23675 0.22 -0.2 4,945,941 + AMB_RS23675 0.22 -2.0 4,945,942 - AMB_RS23675 0.22 -0.1 4,945,942 - AMB_RS23675 0.22 -1.1 4,945,992 - AMB_RS23675 0.27 -0.3 4,945,992 - AMB_RS23675 0.27 -0.6 4,946,155 + AMB_RS23675 0.41 -0.4 4,946,168 - AMB_RS23675 0.42 -1.3 4,946,489 + AMB_RS23675 0.71 -0.6 4,946,490 - AMB_RS23675 0.71 -0.2 4,946,525 - AMB_RS23675 0.74 -0.6 4,946,558 + AMB_RS23675 0.77 -0.0 4,946,558 + AMB_RS23675 0.77 +0.3 4,946,558 + AMB_RS23675 0.77 -0.1 4,946,558 + AMB_RS23675 0.77 -0.2 4,946,558 + AMB_RS23675 0.77 -0.4 4,946,570 + AMB_RS23675 0.78 -0.2 4,946,598 + AMB_RS23675 0.81 +0.7 4,946,598 + AMB_RS23675 0.81 -1.1 4,946,599 - AMB_RS23675 0.81 -0.1 4,946,599 - AMB_RS23675 0.81 -1.1 4,946,599 - AMB_RS23675 0.81 +0.4 4,946,849 + +0.5 4,946,849 + -0.2 4,946,849 + +1.2 4,946,850 - -0.5 4,946,850 - +0.2 4,946,850 - -0.4 4,946,850 - -0.6 4,946,850 - -1.2 4,947,299 + AMB_RS22950 0.75 +0.8 4,947,300 - AMB_RS22950 0.76 +0.8 4,947,377 - AMB_RS22950 0.90 +0.5 4,947,594 + AMB_RS22955 0.12 -0.3 4,947,594 + AMB_RS22955 0.12 -0.2 4,947,595 - AMB_RS22955 0.12 +1.0 4,947,595 - AMB_RS22955 0.12 -0.4 4,947,709 + AMB_RS22955 0.21 -0.0 4,947,710 - AMB_RS22955 0.21 -0.0 4,947,710 - AMB_RS22955 0.21 -0.2 4,947,710 - AMB_RS22955 0.21 -0.4
Or see this region's nucleotide sequence