Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22155

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22145 and AMB_RS22150 are separated by 5 nucleotidesAMB_RS22150 and AMB_RS22155 are separated by 46 nucleotidesAMB_RS22155 and AMB_RS22160 are separated by 9 nucleotides AMB_RS22145: AMB_RS22145 - dienelactone hydrolase family protein, at 4,780,262 to 4,781,128 _RS22145 AMB_RS22150: AMB_RS22150 - MarR family transcriptional regulator, at 4,781,134 to 4,781,583 _RS22150 AMB_RS22155: AMB_RS22155 - histidine phosphatase family protein, at 4,781,630 to 4,782,223 _RS22155 AMB_RS22160: AMB_RS22160 - phenylalanine--tRNA ligase subunit beta, at 4,782,233 to 4,784,629 _RS22160 Position (kb) 4781 4782 4783Strain fitness (log2 ratio) -2 -1 0 1at 4780.787 kb on + strand, within AMB_RS22145at 4780.788 kb on - strand, within AMB_RS22145at 4780.829 kb on + strand, within AMB_RS22145at 4780.829 kb on + strand, within AMB_RS22145at 4780.843 kb on - strand, within AMB_RS22145at 4780.920 kb on - strand, within AMB_RS22145at 4780.954 kb on + strand, within AMB_RS22145at 4781.012 kb on + strand, within AMB_RS22145at 4781.267 kb on - strand, within AMB_RS22150at 4781.400 kb on - strand, within AMB_RS22150at 4781.583 kb on + strandat 4781.631 kb on + strandat 4781.675 kb on + strandat 4781.731 kb on - strand, within AMB_RS22155at 4781.950 kb on + strand, within AMB_RS22155

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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4,780,787 + AMB_RS22145 0.61 -1.2
4,780,788 - AMB_RS22145 0.61 +1.2
4,780,829 + AMB_RS22145 0.65 -1.8
4,780,829 + AMB_RS22145 0.65 -0.2
4,780,843 - AMB_RS22145 0.67 -0.2
4,780,920 - AMB_RS22145 0.76 -0.8
4,780,954 + AMB_RS22145 0.80 -0.3
4,781,012 + AMB_RS22145 0.87 -0.5
4,781,267 - AMB_RS22150 0.30 -0.3
4,781,400 - AMB_RS22150 0.59 -1.2
4,781,583 + -0.3
4,781,631 + +0.5
4,781,675 + -0.6
4,781,731 - AMB_RS22155 0.17 -1.9
4,781,950 + AMB_RS22155 0.54 -2.3

Or see this region's nucleotide sequence