Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21490

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21485 and AMB_RS21490 are separated by 62 nucleotidesAMB_RS21490 and AMB_RS21495 are separated by 23 nucleotidesAMB_RS21495 and AMB_RS21500 are separated by 122 nucleotides AMB_RS21485: AMB_RS21485 - tyrosine recombinase XerC, at 4,659,354 to 4,660,298 _RS21485 AMB_RS21490: AMB_RS21490 - DUF805 domain-containing protein, at 4,660,361 to 4,660,726 _RS21490 AMB_RS21495: AMB_RS21495 - DUF484 domain-containing protein, at 4,660,750 to 4,661,463 _RS21495 AMB_RS21500: AMB_RS21500 - primosomal protein N', at 4,661,586 to 4,663,727 _RS21500 Position (kb) 4660 4661Strain fitness (log2 ratio) -2 -1 0 1at 4659.815 kb on - strand, within AMB_RS21485at 4660.363 kb on - strandat 4660.651 kb on - strand, within AMB_RS21490at 4660.687 kb on - strand, within AMB_RS21490at 4660.687 kb on - strand, within AMB_RS21490at 4660.691 kb on - strandat 4660.727 kb on - strandat 4660.727 kb on - strandat 4660.752 kb on - strandat 4661.209 kb on - strand, within AMB_RS21495at 4661.209 kb on - strand, within AMB_RS21495at 4661.471 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.505 kb on - strandat 4661.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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4,659,815 - AMB_RS21485 0.49 -2.3
4,660,363 - -0.8
4,660,651 - AMB_RS21490 0.79 -0.4
4,660,687 - AMB_RS21490 0.89 -0.1
4,660,687 - AMB_RS21490 0.89 +0.5
4,660,691 - -0.3
4,660,727 - -0.3
4,660,727 - +0.5
4,660,752 - -0.2
4,661,209 - AMB_RS21495 0.64 +0.1
4,661,209 - AMB_RS21495 0.64 +0.0
4,661,471 - +0.4
4,661,505 - -2.2
4,661,505 - +0.1
4,661,505 - +0.2
4,661,505 - +0.6
4,661,505 - -0.4
4,661,505 - -0.1
4,661,505 - -0.8
4,661,505 - +0.3
4,661,505 - +0.2
4,661,505 - -0.1
4,661,562 + -0.3

Or see this region's nucleotide sequence