Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20985

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20980 and AMB_RS20985 are separated by 6 nucleotidesAMB_RS20985 and AMB_RS20990 are separated by 88 nucleotides AMB_RS20980: AMB_RS20980 - alpha/beta hydrolase, at 4,556,491 to 4,557,423 _RS20980 AMB_RS20985: AMB_RS20985 - MFS transporter, at 4,557,430 to 4,558,647 _RS20985 AMB_RS20990: AMB_RS20990 - transcriptional regulator, at 4,558,736 to 4,559,629 _RS20990 Position (kb) 4557 4558 4559Strain fitness (log2 ratio) -2 -1 0 1at 4556.480 kb on + strandat 4556.480 kb on + strandat 4556.480 kb on + strandat 4556.481 kb on - strandat 4556.481 kb on - strandat 4556.498 kb on + strandat 4556.498 kb on + strandat 4556.498 kb on + strandat 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.829 kb on - strand, within AMB_RS20980at 4556.829 kb on - strand, within AMB_RS20980at 4556.884 kb on + strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.996 kb on + strand, within AMB_RS20980at 4556.996 kb on + strand, within AMB_RS20980at 4556.996 kb on + strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4557.008 kb on + strand, within AMB_RS20980at 4557.008 kb on + strand, within AMB_RS20980at 4557.008 kb on + strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.234 kb on - strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.240 kb on - strand, within AMB_RS20980at 4557.281 kb on + strand, within AMB_RS20980at 4557.282 kb on - strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.291 kb on - strand, within AMB_RS20980at 4557.293 kb on + strand, within AMB_RS20980at 4557.293 kb on + strand, within AMB_RS20980at 4557.466 kb on - strandat 4557.466 kb on - strandat 4557.536 kb on + strandat 4557.536 kb on + strandat 4557.536 kb on + strandat 4557.537 kb on - strandat 4557.537 kb on - strandat 4557.537 kb on - strandat 4557.537 kb on - strandat 4557.537 kb on - strandat 4557.730 kb on + strand, within AMB_RS20985at 4557.730 kb on + strand, within AMB_RS20985at 4557.730 kb on + strand, within AMB_RS20985at 4557.730 kb on + strand, within AMB_RS20985at 4557.730 kb on + strand, within AMB_RS20985at 4557.731 kb on - strand, within AMB_RS20985at 4557.731 kb on - strand, within AMB_RS20985at 4557.785 kb on + strand, within AMB_RS20985at 4557.785 kb on + strand, within AMB_RS20985at 4557.906 kb on + strand, within AMB_RS20985at 4557.906 kb on + strand, within AMB_RS20985at 4557.907 kb on - strand, within AMB_RS20985at 4557.923 kb on + strand, within AMB_RS20985at 4557.924 kb on - strand, within AMB_RS20985at 4558.385 kb on + strand, within AMB_RS20985at 4558.386 kb on - strand, within AMB_RS20985at 4558.526 kb on + strandat 4558.527 kb on - strandat 4558.738 kb on - strandat 4558.895 kb on + strand, within AMB_RS20990at 4558.896 kb on - strand, within AMB_RS20990at 4559.112 kb on + strand, within AMB_RS20990at 4559.113 kb on - strand, within AMB_RS20990at 4559.113 kb on - strand, within AMB_RS20990at 4559.182 kb on + strand, within AMB_RS20990at 4559.183 kb on - strand, within AMB_RS20990at 4559.413 kb on + strand, within AMB_RS20990at 4559.413 kb on + strand, within AMB_RS20990at 4559.413 kb on + strand, within AMB_RS20990at 4559.413 kb on + strand, within AMB_RS20990at 4559.413 kb on + strand, within AMB_RS20990at 4559.414 kb on - strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.415 kb on + strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.416 kb on - strand, within AMB_RS20990at 4559.425 kb on - strand, within AMB_RS20990

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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4,556,480 + -0.2
4,556,480 + -0.9
4,556,480 + +0.0
4,556,481 - +0.4
4,556,481 - -0.5
4,556,498 + -0.6
4,556,498 + +0.4
4,556,498 + -0.2
4,556,705 + AMB_RS20980 0.23 -0.5
4,556,705 + AMB_RS20980 0.23 -0.8
4,556,705 + AMB_RS20980 0.23 +0.3
4,556,705 + AMB_RS20980 0.23 -1.4
4,556,705 + AMB_RS20980 0.23 -0.4
4,556,705 + AMB_RS20980 0.23 -0.2
4,556,706 - AMB_RS20980 0.23 -1.3
4,556,706 - AMB_RS20980 0.23 -0.0
4,556,706 - AMB_RS20980 0.23 -0.8
4,556,706 - AMB_RS20980 0.23 -0.1
4,556,706 - AMB_RS20980 0.23 -0.3
4,556,706 - AMB_RS20980 0.23 -1.2
4,556,706 - AMB_RS20980 0.23 -0.2
4,556,829 - AMB_RS20980 0.36 +0.4
4,556,829 - AMB_RS20980 0.36 +0.0
4,556,884 + AMB_RS20980 0.42 -1.1
4,556,885 - AMB_RS20980 0.42 -0.2
4,556,885 - AMB_RS20980 0.42 -0.7
4,556,885 - AMB_RS20980 0.42 -0.6
4,556,885 - AMB_RS20980 0.42 +1.3
4,556,996 + AMB_RS20980 0.54 +0.4
4,556,996 + AMB_RS20980 0.54 -1.1
4,556,996 + AMB_RS20980 0.54 -0.2
4,556,997 - AMB_RS20980 0.54 -0.3
4,556,997 - AMB_RS20980 0.54 -0.9
4,556,997 - AMB_RS20980 0.54 +1.2
4,556,997 - AMB_RS20980 0.54 -1.6
4,557,008 + AMB_RS20980 0.55 -1.9
4,557,008 + AMB_RS20980 0.55 +0.9
4,557,008 + AMB_RS20980 0.55 -0.7
4,557,015 - AMB_RS20980 0.56 +1.4
4,557,015 - AMB_RS20980 0.56 -0.7
4,557,015 - AMB_RS20980 0.56 +0.3
4,557,015 - AMB_RS20980 0.56 -0.3
4,557,234 - AMB_RS20980 0.80 -0.4
4,557,239 + AMB_RS20980 0.80 -0.3
4,557,239 + AMB_RS20980 0.80 -1.6
4,557,239 + AMB_RS20980 0.80 +0.1
4,557,239 + AMB_RS20980 0.80 -0.1
4,557,239 + AMB_RS20980 0.80 +1.7
4,557,240 - AMB_RS20980 0.80 +1.4
4,557,281 + AMB_RS20980 0.85 -0.1
4,557,282 - AMB_RS20980 0.85 -1.1
4,557,290 + AMB_RS20980 0.86 -0.6
4,557,290 + AMB_RS20980 0.86 +0.7
4,557,290 + AMB_RS20980 0.86 +1.4
4,557,290 + AMB_RS20980 0.86 -0.6
4,557,290 + AMB_RS20980 0.86 +0.4
4,557,291 - AMB_RS20980 0.86 -0.3
4,557,293 + AMB_RS20980 0.86 +0.2
4,557,293 + AMB_RS20980 0.86 +0.4
4,557,466 - +0.2
4,557,466 - -0.4
4,557,536 + +0.3
4,557,536 + -0.1
4,557,536 + -0.1
4,557,537 - +0.4
4,557,537 - -0.1
4,557,537 - +0.0
4,557,537 - -1.3
4,557,537 - -0.7
4,557,730 + AMB_RS20985 0.25 +0.0
4,557,730 + AMB_RS20985 0.25 -1.0
4,557,730 + AMB_RS20985 0.25 -0.1
4,557,730 + AMB_RS20985 0.25 +0.4
4,557,730 + AMB_RS20985 0.25 +0.2
4,557,731 - AMB_RS20985 0.25 -1.4
4,557,731 - AMB_RS20985 0.25 +0.2
4,557,785 + AMB_RS20985 0.29 -0.6
4,557,785 + AMB_RS20985 0.29 -0.0
4,557,906 + AMB_RS20985 0.39 +0.2
4,557,906 + AMB_RS20985 0.39 -1.7
4,557,907 - AMB_RS20985 0.39 -0.8
4,557,923 + AMB_RS20985 0.40 -0.5
4,557,924 - AMB_RS20985 0.41 -0.5
4,558,385 + AMB_RS20985 0.78 -0.0
4,558,386 - AMB_RS20985 0.78 +0.0
4,558,526 + -0.7
4,558,527 - -0.2
4,558,738 - -0.1
4,558,895 + AMB_RS20990 0.18 -0.3
4,558,896 - AMB_RS20990 0.18 -0.2
4,559,112 + AMB_RS20990 0.42 -0.1
4,559,113 - AMB_RS20990 0.42 -0.4
4,559,113 - AMB_RS20990 0.42 -0.2
4,559,182 + AMB_RS20990 0.50 -0.1
4,559,183 - AMB_RS20990 0.50 -0.6
4,559,413 + AMB_RS20990 0.76 +0.0
4,559,413 + AMB_RS20990 0.76 -0.5
4,559,413 + AMB_RS20990 0.76 -0.3
4,559,413 + AMB_RS20990 0.76 -1.1
4,559,413 + AMB_RS20990 0.76 -0.0
4,559,414 - AMB_RS20990 0.76 +0.4
4,559,415 + AMB_RS20990 0.76 -1.6
4,559,415 + AMB_RS20990 0.76 -0.6
4,559,415 + AMB_RS20990 0.76 -0.1
4,559,415 + AMB_RS20990 0.76 +0.1
4,559,415 + AMB_RS20990 0.76 +0.3
4,559,415 + AMB_RS20990 0.76 +0.1
4,559,415 + AMB_RS20990 0.76 -0.0
4,559,415 + AMB_RS20990 0.76 -1.0
4,559,416 - AMB_RS20990 0.76 -0.4
4,559,416 - AMB_RS20990 0.76 -0.8
4,559,416 - AMB_RS20990 0.76 -0.6
4,559,416 - AMB_RS20990 0.76 -0.1
4,559,416 - AMB_RS20990 0.76 -0.8
4,559,416 - AMB_RS20990 0.76 -0.7
4,559,416 - AMB_RS20990 0.76 -0.3
4,559,425 - AMB_RS20990 0.77 -2.4

Or see this region's nucleotide sequence