Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20540

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20535 and AMB_RS20540 are separated by 79 nucleotidesAMB_RS20540 and AMB_RS20545 are separated by 6 nucleotidesAMB_RS20545 and AMB_RS20550 overlap by 11 nucleotides AMB_RS20535: AMB_RS20535 - signal recognition particle protein, at 4,463,659 to 4,465,023 _RS20535 AMB_RS20540: AMB_RS20540 - 30S ribosomal protein S16, at 4,465,103 to 4,465,474 _RS20540 AMB_RS20545: AMB_RS20545 - ribosome maturation factor RimM, at 4,465,481 to 4,466,011 _RS20545 AMB_RS20550: AMB_RS20550 - tRNA (guanine-N(1)-)-methyltransferase, at 4,466,001 to 4,466,717 _RS20550 Position (kb) 4465 4466Strain fitness (log2 ratio) -1 0 1at 4465.970 kb on + strandat 4465.970 kb on + strandat 4465.970 kb on + strandat 4465.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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4,465,970 + +0.2
4,465,970 + +1.0
4,465,970 + -0.3
4,465,970 + -0.6

Or see this region's nucleotide sequence