Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18870

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS18865 and AMB_RS18870 are separated by 10 nucleotidesAMB_RS18870 and AMB_RS18875 overlap by 4 nucleotides AMB_RS18865: AMB_RS18865 - homoserine dehydrogenase, at 4,101,511 to 4,102,797 _RS18865 AMB_RS18870: AMB_RS18870 - fructose-bisphosphatase class II, at 4,102,808 to 4,103,800 _RS18870 AMB_RS18875: AMB_RS18875 - single-stranded-DNA-specific exonuclease RecJ, at 4,103,797 to 4,105,590 _RS18875 Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -1 0 1at 4103.192 kb on + strand, within AMB_RS18870at 4103.192 kb on + strand, within AMB_RS18870at 4103.192 kb on + strand, within AMB_RS18870at 4103.192 kb on + strand, within AMB_RS18870at 4103.192 kb on + strand, within AMB_RS18870at 4103.192 kb on + strand, within AMB_RS18870at 4103.192 kb on + strand, within AMB_RS18870at 4103.363 kb on + strand, within AMB_RS18870at 4103.363 kb on + strand, within AMB_RS18870at 4103.363 kb on + strand, within AMB_RS18870at 4103.363 kb on + strand, within AMB_RS18870at 4103.453 kb on + strand, within AMB_RS18870at 4103.453 kb on + strand, within AMB_RS18870at 4103.453 kb on + strand, within AMB_RS18870at 4103.453 kb on + strand, within AMB_RS18870at 4103.453 kb on + strand, within AMB_RS18870at 4103.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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4,103,192 + AMB_RS18870 0.39 -0.1
4,103,192 + AMB_RS18870 0.39 +0.3
4,103,192 + AMB_RS18870 0.39 -0.2
4,103,192 + AMB_RS18870 0.39 +0.7
4,103,192 + AMB_RS18870 0.39 -0.5
4,103,192 + AMB_RS18870 0.39 -0.1
4,103,192 + AMB_RS18870 0.39 +0.5
4,103,363 + AMB_RS18870 0.56 -0.2
4,103,363 + AMB_RS18870 0.56 -0.8
4,103,363 + AMB_RS18870 0.56 +0.3
4,103,363 + AMB_RS18870 0.56 -0.0
4,103,453 + AMB_RS18870 0.65 -1.5
4,103,453 + AMB_RS18870 0.65 -0.1
4,103,453 + AMB_RS18870 0.65 +0.0
4,103,453 + AMB_RS18870 0.65 +0.6
4,103,453 + AMB_RS18870 0.65 -0.9
4,103,714 + -0.3

Or see this region's nucleotide sequence