Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16310

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16305 and AMB_RS16310 are separated by 139 nucleotidesAMB_RS16310 and AMB_RS16315 are separated by 64 nucleotides AMB_RS16305: AMB_RS16305 - electron transfer flavoprotein subunit alpha, at 3,489,850 to 3,490,788 _RS16305 AMB_RS16310: AMB_RS16310 - electron transfer flavoprotein subunit beta/FixA family protein, at 3,490,928 to 3,491,677 _RS16310 AMB_RS16315: AMB_RS16315 - acyl-CoA dehydrogenase, at 3,491,742 to 3,492,920 _RS16315 Position (kb) 3490 3491 3492Strain fitness (log2 ratio) -3 -2 -1 0 1at 3491.811 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.812 kb on + strandat 3491.813 kb on - strandat 3491.813 kb on - strandat 3491.813 kb on - strandat 3491.813 kb on - strandat 3491.813 kb on - strandat 3491.813 kb on - strandat 3491.813 kb on - strandat 3492.106 kb on + strand, within AMB_RS16315at 3492.106 kb on + strand, within AMB_RS16315at 3492.106 kb on + strand, within AMB_RS16315at 3492.106 kb on + strand, within AMB_RS16315at 3492.107 kb on - strand, within AMB_RS16315at 3492.107 kb on - strand, within AMB_RS16315at 3492.107 kb on - strand, within AMB_RS16315at 3492.107 kb on - strand, within AMB_RS16315at 3492.107 kb on - strand, within AMB_RS16315at 3492.446 kb on - strand, within AMB_RS16315at 3492.559 kb on + strand, within AMB_RS16315at 3492.560 kb on - strand, within AMB_RS16315at 3492.560 kb on - strand, within AMB_RS16315at 3492.560 kb on - strand, within AMB_RS16315at 3492.560 kb on - strand, within AMB_RS16315at 3492.560 kb on - strand, within AMB_RS16315at 3492.560 kb on - strand, within AMB_RS16315

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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3,491,811 + -0.3
3,491,812 + -0.4
3,491,812 + +0.0
3,491,812 + -0.2
3,491,812 + -0.3
3,491,812 + -1.2
3,491,812 + -0.2
3,491,812 + -1.3
3,491,812 + +0.1
3,491,812 + +0.3
3,491,813 - -0.2
3,491,813 - -0.3
3,491,813 - -0.5
3,491,813 - -0.2
3,491,813 - -1.2
3,491,813 - -0.2
3,491,813 - +0.2
3,492,106 + AMB_RS16315 0.31 -3.0
3,492,106 + AMB_RS16315 0.31 -0.2
3,492,106 + AMB_RS16315 0.31 +0.1
3,492,106 + AMB_RS16315 0.31 -1.2
3,492,107 - AMB_RS16315 0.31 -0.2
3,492,107 - AMB_RS16315 0.31 +0.2
3,492,107 - AMB_RS16315 0.31 +0.2
3,492,107 - AMB_RS16315 0.31 +0.2
3,492,107 - AMB_RS16315 0.31 -0.2
3,492,446 - AMB_RS16315 0.60 -1.0
3,492,559 + AMB_RS16315 0.69 -0.1
3,492,560 - AMB_RS16315 0.69 -0.1
3,492,560 - AMB_RS16315 0.69 -0.2
3,492,560 - AMB_RS16315 0.69 +0.2
3,492,560 - AMB_RS16315 0.69 -0.7
3,492,560 - AMB_RS16315 0.69 +0.2
3,492,560 - AMB_RS16315 0.69 -0.7

Or see this region's nucleotide sequence