Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15030

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15025 and AMB_RS15030 are separated by 33 nucleotidesAMB_RS15030 and AMB_RS15035 are separated by 322 nucleotides AMB_RS15025: AMB_RS15025 - MFS transporter, at 3,218,609 to 3,219,790 _RS15025 AMB_RS15030: AMB_RS15030 - FAD-binding protein, at 3,219,824 to 3,221,197 _RS15030 AMB_RS15035: AMB_RS15035 - DUF2189 domain-containing protein, at 3,221,520 to 3,222,296 _RS15035 Position (kb) 3219 3220 3221 3222Strain fitness (log2 ratio) -2 -1 0 1 2at 3218.939 kb on + strand, within AMB_RS15025at 3218.939 kb on + strand, within AMB_RS15025at 3218.940 kb on - strand, within AMB_RS15025at 3219.131 kb on + strand, within AMB_RS15025at 3219.131 kb on + strand, within AMB_RS15025at 3219.132 kb on - strand, within AMB_RS15025at 3219.132 kb on - strand, within AMB_RS15025at 3219.278 kb on + strand, within AMB_RS15025at 3219.279 kb on - strand, within AMB_RS15025at 3219.279 kb on - strand, within AMB_RS15025at 3219.279 kb on - strand, within AMB_RS15025at 3219.788 kb on + strandat 3219.788 kb on + strandat 3219.788 kb on + strandat 3219.789 kb on - strandat 3219.789 kb on - strandat 3219.789 kb on - strandat 3219.793 kb on + strandat 3219.803 kb on + strandat 3220.184 kb on + strand, within AMB_RS15030at 3220.185 kb on - strand, within AMB_RS15030at 3220.185 kb on - strand, within AMB_RS15030at 3220.385 kb on + strand, within AMB_RS15030at 3220.386 kb on - strand, within AMB_RS15030at 3220.386 kb on - strand, within AMB_RS15030at 3220.528 kb on - strand, within AMB_RS15030at 3220.674 kb on + strand, within AMB_RS15030at 3220.768 kb on - strand, within AMB_RS15030at 3220.790 kb on + strand, within AMB_RS15030at 3220.790 kb on + strand, within AMB_RS15030at 3220.791 kb on - strand, within AMB_RS15030at 3220.791 kb on - strand, within AMB_RS15030at 3220.791 kb on - strand, within AMB_RS15030at 3220.793 kb on + strand, within AMB_RS15030at 3220.793 kb on + strand, within AMB_RS15030at 3221.245 kb on + strandat 3221.410 kb on + strandat 3221.411 kb on - strandat 3221.411 kb on - strandat 3221.445 kb on - strandat 3221.466 kb on - strandat 3221.498 kb on + strandat 3221.498 kb on + strandat 3221.499 kb on - strandat 3221.951 kb on + strand, within AMB_RS15035at 3222.043 kb on + strand, within AMB_RS15035at 3222.043 kb on + strand, within AMB_RS15035at 3222.043 kb on + strand, within AMB_RS15035at 3222.043 kb on + strand, within AMB_RS15035at 3222.100 kb on - strand, within AMB_RS15035at 3222.161 kb on - strand, within AMB_RS15035

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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3,218,939 + AMB_RS15025 0.28 +0.4
3,218,939 + AMB_RS15025 0.28 -0.7
3,218,940 - AMB_RS15025 0.28 -0.1
3,219,131 + AMB_RS15025 0.44 +0.2
3,219,131 + AMB_RS15025 0.44 +0.3
3,219,132 - AMB_RS15025 0.44 -1.0
3,219,132 - AMB_RS15025 0.44 -0.7
3,219,278 + AMB_RS15025 0.57 -0.4
3,219,279 - AMB_RS15025 0.57 -0.3
3,219,279 - AMB_RS15025 0.57 +0.6
3,219,279 - AMB_RS15025 0.57 +0.1
3,219,788 + +0.6
3,219,788 + +0.2
3,219,788 + -0.0
3,219,789 - +0.2
3,219,789 - +0.3
3,219,789 - +1.1
3,219,793 + -1.0
3,219,803 + +0.1
3,220,184 + AMB_RS15030 0.26 -1.3
3,220,185 - AMB_RS15030 0.26 +0.2
3,220,185 - AMB_RS15030 0.26 +0.4
3,220,385 + AMB_RS15030 0.41 +0.3
3,220,386 - AMB_RS15030 0.41 -0.6
3,220,386 - AMB_RS15030 0.41 -0.0
3,220,528 - AMB_RS15030 0.51 -0.7
3,220,674 + AMB_RS15030 0.62 -0.4
3,220,768 - AMB_RS15030 0.69 -0.2
3,220,790 + AMB_RS15030 0.70 +0.3
3,220,790 + AMB_RS15030 0.70 -0.1
3,220,791 - AMB_RS15030 0.70 -0.5
3,220,791 - AMB_RS15030 0.70 +2.1
3,220,791 - AMB_RS15030 0.70 -0.3
3,220,793 + AMB_RS15030 0.71 -0.4
3,220,793 + AMB_RS15030 0.71 +0.0
3,221,245 + -1.1
3,221,410 + +0.5
3,221,411 - -0.1
3,221,411 - +0.3
3,221,445 - -2.3
3,221,466 - -0.5
3,221,498 + +0.3
3,221,498 + -0.2
3,221,499 - +0.1
3,221,951 + AMB_RS15035 0.55 +0.1
3,222,043 + AMB_RS15035 0.67 -0.9
3,222,043 + AMB_RS15035 0.67 +0.7
3,222,043 + AMB_RS15035 0.67 -0.6
3,222,043 + AMB_RS15035 0.67 -0.3
3,222,100 - AMB_RS15035 0.75 +0.5
3,222,161 - AMB_RS15035 0.82 -0.4

Or see this region's nucleotide sequence