Experiment: without_iron3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23460 and AMB_RS13780 are separated by 45 nucleotides AMB_RS13780 and AMB_RS13785 overlap by 4 nucleotides AMB_RS13785 and AMB_RS13790 overlap by 4 nucleotides AMB_RS13790 and AMB_RS13795 are separated by 10 nucleotides
AMB_RS23460: AMB_RS23460 - hemerythrin, at 2,926,930 to 2,927,469
_RS23460
AMB_RS13780: AMB_RS13780 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,927,515 to 2,928,144
_RS13780
AMB_RS13785: AMB_RS13785 - DUF2155 domain-containing protein, at 2,928,141 to 2,928,644
_RS13785
AMB_RS13790: AMB_RS13790 - EamA/RhaT family transporter, at 2,928,641 to 2,929,480
_RS13790
AMB_RS13795: AMB_RS13795 - MCE family protein, at 2,929,491 to 2,929,979
_RS13795
Position (kb)
2928
2929 Strain fitness (log2 ratio)
-2
-1
0
1 at 2927.431 kb on + strand at 2927.431 kb on + strand at 2927.446 kb on + strand at 2927.449 kb on + strand at 2927.602 kb on + strand, within AMB_RS13780 at 2927.603 kb on - strand, within AMB_RS13780 at 2927.603 kb on - strand, within AMB_RS13780 at 2928.045 kb on - strand, within AMB_RS13780 at 2928.045 kb on - strand, within AMB_RS13780 at 2928.059 kb on - strand, within AMB_RS13780 at 2928.766 kb on + strand, within AMB_RS13790 at 2928.766 kb on + strand, within AMB_RS13790 at 2928.766 kb on + strand, within AMB_RS13790 at 2928.767 kb on - strand, within AMB_RS13790 at 2928.773 kb on + strand, within AMB_RS13790 at 2928.773 kb on + strand, within AMB_RS13790 at 2928.816 kb on + strand, within AMB_RS13790 at 2928.816 kb on + strand, within AMB_RS13790 at 2928.816 kb on + strand, within AMB_RS13790 at 2928.816 kb on + strand, within AMB_RS13790 at 2928.817 kb on - strand, within AMB_RS13790 at 2928.828 kb on + strand, within AMB_RS13790 at 2928.867 kb on + strand, within AMB_RS13790 at 2928.868 kb on - strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.008 kb on + strand, within AMB_RS13790 at 2929.009 kb on - strand, within AMB_RS13790 at 2929.009 kb on - strand, within AMB_RS13790 at 2929.184 kb on + strand, within AMB_RS13790 at 2929.184 kb on + strand, within AMB_RS13790 at 2929.185 kb on - strand, within AMB_RS13790 at 2929.185 kb on - strand, within AMB_RS13790 at 2929.233 kb on + strand, within AMB_RS13790 at 2929.234 kb on - strand, within AMB_RS13790 at 2929.234 kb on - strand, within AMB_RS13790 at 2929.444 kb on + strand at 2929.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron3 remove 2,927,431 + +0.6 2,927,431 + +0.2 2,927,446 + -0.9 2,927,449 + -0.7 2,927,602 + AMB_RS13780 0.14 -0.3 2,927,603 - AMB_RS13780 0.14 +0.7 2,927,603 - AMB_RS13780 0.14 -0.6 2,928,045 - AMB_RS13780 0.84 +0.8 2,928,045 - AMB_RS13780 0.84 -1.8 2,928,059 - AMB_RS13780 0.86 +0.2 2,928,766 + AMB_RS13790 0.15 -0.3 2,928,766 + AMB_RS13790 0.15 -0.6 2,928,766 + AMB_RS13790 0.15 +0.5 2,928,767 - AMB_RS13790 0.15 -0.0 2,928,773 + AMB_RS13790 0.16 -0.8 2,928,773 + AMB_RS13790 0.16 +0.1 2,928,816 + AMB_RS13790 0.21 -0.5 2,928,816 + AMB_RS13790 0.21 -0.2 2,928,816 + AMB_RS13790 0.21 -0.3 2,928,816 + AMB_RS13790 0.21 -0.8 2,928,817 - AMB_RS13790 0.21 +0.8 2,928,828 + AMB_RS13790 0.22 +0.7 2,928,867 + AMB_RS13790 0.27 -0.0 2,928,868 - AMB_RS13790 0.27 +1.0 2,929,008 + AMB_RS13790 0.44 -0.5 2,929,008 + AMB_RS13790 0.44 -0.5 2,929,008 + AMB_RS13790 0.44 -0.4 2,929,008 + AMB_RS13790 0.44 +0.3 2,929,008 + AMB_RS13790 0.44 +0.5 2,929,008 + AMB_RS13790 0.44 -0.2 2,929,008 + AMB_RS13790 0.44 -0.5 2,929,009 - AMB_RS13790 0.44 +0.6 2,929,009 - AMB_RS13790 0.44 -0.6 2,929,184 + AMB_RS13790 0.65 +0.1 2,929,184 + AMB_RS13790 0.65 -0.3 2,929,185 - AMB_RS13790 0.65 -0.1 2,929,185 - AMB_RS13790 0.65 -0.3 2,929,233 + AMB_RS13790 0.70 -0.0 2,929,234 - AMB_RS13790 0.71 -0.4 2,929,234 - AMB_RS13790 0.71 -0.2 2,929,444 + -0.1 2,929,444 + -0.2
Or see this region's nucleotide sequence