Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09825

Experiment: without_iron3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	without_iron3
2,090,580	+				-0.1
2,090,580	+				-1.3
2,090,580	+				-0.2
2,090,581	-				+3.6
2,090,581	-				-0.1
2,090,617	+		AMB_RS24375	0.11	-0.4
2,090,617	+		AMB_RS24375	0.11	-0.3
2,090,617	+		AMB_RS24375	0.11	+0.5
2,090,618	-		AMB_RS24375	0.11	-0.6
2,090,618	-		AMB_RS24375	0.11	+0.2
2,090,677	+		AMB_RS24375	0.18	+0.1
2,090,678	-		AMB_RS24375	0.18	-0.0
2,090,754	+		AMB_RS24375	0.26	-0.5
2,090,754	+		AMB_RS24375	0.26	-1.9
2,090,754	+		AMB_RS24375	0.26	-0.2
2,090,754	+		AMB_RS24375	0.26	-0.2
2,090,755	-		AMB_RS24375	0.26	-0.4
2,090,755	-		AMB_RS24375	0.26	-0.4
2,090,755	-		AMB_RS24375	0.26	-0.1
2,090,872	+		AMB_RS24375	0.39	+1.9
2,090,872	+		AMB_RS24375	0.39	-0.2
2,090,914	+		AMB_RS24375	0.44	-0.5
2,090,915	-		AMB_RS24375	0.44	-1.0
2,090,972	-		AMB_RS24375	0.50	-0.1
2,090,972	-		AMB_RS24375	0.50	-0.3
2,090,972	-		AMB_RS24375	0.50	-0.5
2,091,068	+		AMB_RS24375	0.61	-0.7
2,091,068	+		AMB_RS24375	0.61	-0.7
2,091,068	+		AMB_RS24375	0.61	+0.5
2,091,069	-		AMB_RS24375	0.61	-0.5
2,091,296	+		AMB_RS24375	0.86	+0.5
2,091,296	+		AMB_RS24375	0.86	+0.6
2,091,363	+				-0.2
2,091,364	-				-0.2
2,091,364	-				-0.2
2,092,325	+		AMB_RS09825	0.15	-0.8
2,092,418	+		AMB_RS09825	0.17	-0.7
2,092,595	+		AMB_RS09825	0.20	+1.0
2,092,595	+		AMB_RS09825	0.20	-1.6
2,092,595	+		AMB_RS09825	0.20	-0.5
2,092,596	-		AMB_RS09825	0.20	-0.5
2,092,596	-		AMB_RS09825	0.20	-1.0
2,092,596	-		AMB_RS09825	0.20	-1.4
2,092,596	-		AMB_RS09825	0.20	-0.0
2,092,596	-		AMB_RS09825	0.20	+0.3
2,092,596	-		AMB_RS09825	0.20	-0.2
2,092,596	-		AMB_RS09825	0.20	+0.0
2,092,596	-		AMB_RS09825	0.20	-0.5
2,092,905	-		AMB_RS09825	0.25	+0.0
2,092,905	-		AMB_RS09825	0.25	-1.5
2,093,009	+		AMB_RS09825	0.27	+0.6
2,093,009	+		AMB_RS09825	0.27	+0.5
2,093,010	-		AMB_RS09825	0.27	+0.6
2,093,099	+		AMB_RS09825	0.28	-0.6
2,093,099	+		AMB_RS09825	0.28	-0.2
2,093,099	+		AMB_RS09825	0.28	-0.0
2,093,099	+		AMB_RS09825	0.28	-0.3
2,093,099	+		AMB_RS09825	0.28	-0.5
2,093,099	+		AMB_RS09825	0.28	+0.9
2,093,100	-		AMB_RS09825	0.29	+1.9
2,093,100	-		AMB_RS09825	0.29	-0.3
2,093,100	-		AMB_RS09825	0.29	-0.0
2,093,156	+		AMB_RS09825	0.29	-0.1
2,093,156	+		AMB_RS09825	0.29	-0.2
2,093,157	-		AMB_RS09825	0.29	+0.3
2,093,518	-		AMB_RS09825	0.36	+0.1
2,093,518	-		AMB_RS09825	0.36	+0.0
2,093,519	+		AMB_RS09825	0.36	-0.3
2,093,519	+		AMB_RS09825	0.36	-0.1
2,093,520	-		AMB_RS09825	0.36	+0.7
2,093,520	-		AMB_RS09825	0.36	+0.4
2,093,520	-		AMB_RS09825	0.36	-0.5
2,093,526	-		AMB_RS09825	0.36	-1.0
2,093,543	+		AMB_RS09825	0.36	+0.6
2,093,543	+		AMB_RS09825	0.36	-1.3
2,093,543	+		AMB_RS09825	0.36	+0.1
2,093,544	-		AMB_RS09825	0.36	-0.8
2,093,544	-		AMB_RS09825	0.36	+0.5
2,093,544	-		AMB_RS09825	0.36	+0.2
2,093,544	-		AMB_RS09825	0.36	+0.5
2,093,544	-		AMB_RS09825	0.36	+0.0
2,093,661	-		AMB_RS09825	0.38	-1.7
2,093,835	-		AMB_RS09825	0.41	-0.1
2,093,862	-		AMB_RS09825	0.41	-0.2
2,093,990	+		AMB_RS09825	0.44	+0.2
2,093,990	+		AMB_RS09825	0.44	-0.7
2,093,990	+		AMB_RS09825	0.44	+0.1
2,093,990	+		AMB_RS09825	0.44	-0.1
2,093,990	+		AMB_RS09825	0.44	-0.9
2,093,990	+		AMB_RS09825	0.44	-0.4
2,093,991	-		AMB_RS09825	0.44	+0.2
2,093,991	-		AMB_RS09825	0.44	-0.8
2,093,991	-		AMB_RS09825	0.44	-0.6
2,093,991	-		AMB_RS09825	0.44	-0.6
2,093,991	-		AMB_RS09825	0.44	-1.3
2,094,176	+		AMB_RS09825	0.47	+0.8
2,094,176	+		AMB_RS09825	0.47	+0.2
2,094,177	-		AMB_RS09825	0.47	-0.3
2,094,177	-		AMB_RS09825	0.47	+1.3
2,094,186	+		AMB_RS09825	0.47	+0.3
2,094,186	+		AMB_RS09825	0.47	+0.5
2,094,187	-		AMB_RS09825	0.47	+0.1
2,094,187	-		AMB_RS09825	0.47	+0.3
2,094,187	-		AMB_RS09825	0.47	+0.3
2,094,187	-		AMB_RS09825	0.47	+0.0
2,094,245	+		AMB_RS09825	0.48	+0.8
2,094,245	+		AMB_RS09825	0.48	-0.1
2,094,245	+		AMB_RS09825	0.48	-0.5
2,094,245	+		AMB_RS09825	0.48	-0.7
2,094,246	-		AMB_RS09825	0.48	-1.8
2,094,254	+		AMB_RS09825	0.48	-0.3
2,094,254	+		AMB_RS09825	0.48	-0.4
2,094,254	+		AMB_RS09825	0.48	-0.5
2,094,255	-		AMB_RS09825	0.48	-0.4
2,094,263	+		AMB_RS09825	0.48	-0.3
2,094,263	+		AMB_RS09825	0.48	+0.0
2,094,263	+		AMB_RS09825	0.48	-1.1
2,094,263	+		AMB_RS09825	0.48	-0.8
2,094,263	+		AMB_RS09825	0.48	+0.6
2,094,264	-		AMB_RS09825	0.48	-0.5
2,094,264	-		AMB_RS09825	0.48	-0.1
2,094,264	-		AMB_RS09825	0.48	-0.7
2,094,486	-		AMB_RS09825	0.52	+1.3
2,094,567	-		AMB_RS09825	0.53	+0.4
2,094,567	-		AMB_RS09825	0.53	+1.2
2,094,567	-		AMB_RS09825	0.53	-0.5
2,094,587	+		AMB_RS09825	0.54	+0.1
2,094,587	+		AMB_RS09825	0.54	-1.1
2,094,587	+		AMB_RS09825	0.54	-0.4
2,094,588	-		AMB_RS09825	0.54	-1.9
2,094,935	+		AMB_RS09825	0.60	-0.6
2,094,935	+		AMB_RS09825	0.60	-0.2
2,094,936	-		AMB_RS09825	0.60	+0.6
2,095,031	+		AMB_RS09825	0.61	-2.7
2,095,031	+		AMB_RS09825	0.61	-0.0
2,095,032	-		AMB_RS09825	0.61	+0.2
2,095,032	-		AMB_RS09825	0.61	-0.3
2,095,032	-		AMB_RS09825	0.61	-0.4
2,095,265	+		AMB_RS09825	0.65	-1.6
2,095,265	+		AMB_RS09825	0.65	-0.1
2,095,265	+		AMB_RS09825	0.65	+0.4
2,095,265	+		AMB_RS09825	0.65	-0.1
2,095,265	+		AMB_RS09825	0.65	-0.0
2,095,266	-		AMB_RS09825	0.65	-2.4
2,095,266	-		AMB_RS09825	0.65	+0.1
2,095,382	+		AMB_RS09825	0.67	-0.3
2,095,383	-		AMB_RS09825	0.67	+0.1
2,095,689	+		AMB_RS09825	0.73	+2.9
2,095,689	+		AMB_RS09825	0.73	-0.7
2,095,690	-		AMB_RS09825	0.73	+0.6
2,095,690	-		AMB_RS09825	0.73	-0.3
2,095,823	+		AMB_RS09825	0.75	-0.7
2,095,823	+		AMB_RS09825	0.75	+3.5
2,095,824	-		AMB_RS09825	0.75	-0.6
2,096,193	-		AMB_RS09825	0.81	-0.2
2,096,303	+		AMB_RS09825	0.83	-1.4
2,096,304	-		AMB_RS09825	0.83	-0.3
2,096,693	+		AMB_RS09825	0.90	-0.6
2,096,694	-		AMB_RS09825	0.90	-0.2
2,096,714	+		AMB_RS09825	0.90	-0.1
2,096,714	+		AMB_RS09825	0.90	+0.8
2,096,714	+		AMB_RS09825	0.90	-0.6
2,096,714	+		AMB_RS09825	0.90	-0.4
2,096,715	-		AMB_RS09825	0.90	-0.8
2,096,715	-		AMB_RS09825	0.90	-0.0
2,096,715	-		AMB_RS09825	0.90	+0.2
2,096,774	+				-0.5
2,096,774	+				-0.3
2,096,774	+				-0.3
2,096,774	+				-0.1
2,096,775	-				-0.6
2,096,775	-				+1.5
2,096,907	+				-0.9
2,097,380	+				-0.7
2,097,381	-				+0.4
2,097,381	-				-0.2
2,097,466	+				-0.1
2,097,528	+				-0.3
2,097,544	-				-0.3
2,097,996	+				+0.0
2,097,996	+				-0.2
2,097,997	-				-1.1
2,097,997	-				+0.2
2,098,015	+				-0.1
2,098,015	+				-0.7
2,098,015	+				-1.0
2,098,015	+				-0.4
2,098,016	-				+0.3
2,098,016	-				-1.2
2,098,098	-				-0.5
2,098,199	+				-0.7
2,098,199	+				-0.1
2,098,200	-				-0.6