Strain Fitness in Magnetospirillum magneticum AMB-1

Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08455

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	without_iron3
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1,809,780	+	AMB_RS08450	0.52	-0.8
1,809,780	+	AMB_RS08450	0.52	+0.8
1,809,780	+	AMB_RS08450	0.52	-0.8
1,809,781	-	AMB_RS08450	0.52	-0.3
1,809,781	-	AMB_RS08450	0.52	-0.3
1,809,781	-	AMB_RS08450	0.52	-0.7
1,809,781	-	AMB_RS08450	0.52	-0.7
1,809,781	-	AMB_RS08450	0.52	-0.2
1,809,781	-	AMB_RS08450	0.52	+0.7
1,809,781	-	AMB_RS08450	0.52	-0.5
1,809,927	+	AMB_RS08450	0.65	-0.4
1,809,927	+	AMB_RS08450	0.65	-0.6
1,809,928	-	AMB_RS08450	0.65	-0.5
1,809,928	-	AMB_RS08450	0.65	+0.3
1,809,928	-	AMB_RS08450	0.65	-0.2
1,809,928	-	AMB_RS08450	0.65	-0.4
1,809,928	-	AMB_RS08450	0.65	+0.4
1,809,928	-	AMB_RS08450	0.65	-1.0
1,809,928	-	AMB_RS08450	0.65	-2.9
1,809,928	-	AMB_RS08450	0.65	-0.9
1,809,928	-	AMB_RS08450	0.65	-0.2
1,809,928	-	AMB_RS08450	0.65	-0.2
1,810,080	+	AMB_RS08450	0.78	-0.5
1,810,081	-	AMB_RS08450	0.78	+0.3
1,810,081	-	AMB_RS08450	0.78	-0.7
1,810,128	+	AMB_RS08450	0.82	-0.2
1,810,128	+	AMB_RS08450	0.82	-0.0
1,810,128	+	AMB_RS08450	0.82	-0.4
1,810,129	-	AMB_RS08450	0.82	-0.1
1,810,129	-	AMB_RS08450	0.82	+0.3
1,810,129	-	AMB_RS08450	0.82	-1.2
1,810,221	+			-2.4
1,810,221	+			-1.6
1,810,222	-			-0.6
1,810,222	-			-0.9
1,810,222	-			-0.0
1,810,222	-			-0.1
1,810,222	-			-0.7
1,810,222	-			+0.3
1,810,292	+			-0.9
1,810,292	+			-0.0
1,810,293	-			-1.2
1,810,293	-			-0.1
1,810,401	-			-0.3
1,810,437	+			-0.8
1,810,437	+			-0.5
1,810,437	+			+0.9
1,810,437	+			-0.3
1,810,437	+			-0.4
1,810,437	+			-1.1
1,810,437	+			-0.8
1,810,437	+			-0.4
1,810,438	-			-0.9
1,810,438	-			-0.2
1,810,438	-			-0.9
1,810,438	-			-1.3
1,810,438	-			-0.6
1,810,438	-			-1.0
1,810,438	-			-0.1
1,810,438	-			-0.7
1,810,470	+			-1.3
1,810,470	+			-1.2
1,810,471	-			-0.3
1,810,471	-			-0.7
1,810,471	-			-0.1
1,810,503	+			-1.5
1,810,503	+			-0.7
1,810,503	+			+0.1
1,810,503	+			-1.5
1,810,503	+			+0.5
1,810,504	-	AMB_RS08455	0.10	-0.6
1,810,504	-	AMB_RS08455	0.10	-0.9
1,810,504	-	AMB_RS08455	0.10	-0.9
1,810,504	-	AMB_RS08455	0.10	-1.7
1,810,504	-	AMB_RS08455	0.10	-1.2
1,810,504	-	AMB_RS08455	0.10	-1.6
1,810,504	-	AMB_RS08455	0.10	+0.4
1,810,504	-	AMB_RS08455	0.10	-0.3
1,810,504	-	AMB_RS08455	0.10	+0.3
1,810,504	-	AMB_RS08455	0.10	-0.5
1,810,599	+	AMB_RS08455	0.21	-1.0
1,810,599	+	AMB_RS08455	0.21	-1.0
1,810,599	+	AMB_RS08455	0.21	+0.5
1,810,599	+	AMB_RS08455	0.21	-0.7
1,810,599	+	AMB_RS08455	0.21	-0.5
1,810,600	-	AMB_RS08455	0.21	-0.0
1,810,600	-	AMB_RS08455	0.21	+0.6
1,810,600	-	AMB_RS08455	0.21	+0.8
1,810,600	-	AMB_RS08455	0.21	-0.6
1,810,600	-	AMB_RS08455	0.21	-0.1
1,810,600	-	AMB_RS08455	0.21	+0.3
1,810,600	-	AMB_RS08455	0.21	-1.4
1,810,600	-	AMB_RS08455	0.21	-0.8
1,810,600	-	AMB_RS08455	0.21	-0.3
1,810,600	-	AMB_RS08455	0.21	+0.3
1,810,600	-	AMB_RS08455	0.21	-0.9
1,810,600	-	AMB_RS08455	0.21	-0.3
1,810,600	-	AMB_RS08455	0.21	-0.4
1,810,600	-	AMB_RS08455	0.21	-1.3
1,810,600	-	AMB_RS08455	0.21	-0.5
1,810,854	-	AMB_RS08455	0.50	-1.0
1,810,884	+	AMB_RS08455	0.53	+0.9
1,810,885	-	AMB_RS08455	0.54	+0.2
1,810,885	-	AMB_RS08455	0.54	-1.3
1,810,885	-	AMB_RS08455	0.54	-0.7
1,810,885	-	AMB_RS08455	0.54	-0.5
1,810,885	-	AMB_RS08455	0.54	-0.6
1,811,058	+	AMB_RS08455	0.73	-1.1
1,811,058	+	AMB_RS08455	0.73	+0.3
1,811,058	+	AMB_RS08455	0.73	-0.9
1,811,058	+	AMB_RS08455	0.73	-1.9
1,811,058	+	AMB_RS08455	0.73	+0.2
1,811,059	-	AMB_RS08455	0.73	-0.6
1,811,059	-	AMB_RS08455	0.73	-1.1
1,811,059	-	AMB_RS08455	0.73	-1.1
1,811,184	+	AMB_RS08455	0.88	-0.6
1,811,200	-	AMB_RS08455	0.89	-0.1
1,811,200	-	AMB_RS08455	0.89	-0.2
1,811,380	+			-0.7
1,811,380	+			-0.7
1,811,380	+			-0.7
1,811,380	+			-0.5
1,811,380	+			+0.8
1,811,380	+			-0.7
1,811,380	+			+0.5
1,811,380	+			-0.6
1,811,381	-			-0.0
1,811,381	-			-1.7
1,811,381	-			-0.3
1,811,381	-			-0.4
1,811,381	-			-0.2
1,811,381	-			+0.2
1,811,386	+			-1.1
1,811,386	+			-0.6
1,811,387	-			-1.0
1,811,387	-			-0.0
1,811,387	-			-0.7
1,811,503	+	AMB_RS08460	0.22	-0.1
1,811,629	+	AMB_RS08460	0.35	+0.5
1,811,629	+	AMB_RS08460	0.35	+1.3
1,811,629	+	AMB_RS08460	0.35	-0.3
1,811,629	+	AMB_RS08460	0.35	-0.7
1,811,629	+	AMB_RS08460	0.35	-1.8
1,811,629	+	AMB_RS08460	0.35	-1.6
1,811,630	-	AMB_RS08460	0.35	+0.3
1,811,630	-	AMB_RS08460	0.35	-1.4
1,811,630	-	AMB_RS08460	0.35	-0.7
1,811,630	-	AMB_RS08460	0.35	-0.1
1,811,630	-	AMB_RS08460	0.35	-0.8
1,811,773	+	AMB_RS08460	0.50	-0.5
1,811,774	-	AMB_RS08460	0.50	-1.7
1,811,774	-	AMB_RS08460	0.50	-0.7
1,811,911	+	AMB_RS08460	0.65	-0.8
1,811,911	+	AMB_RS08460	0.65	-0.9
1,811,911	+	AMB_RS08460	0.65	-1.8
1,811,911	+	AMB_RS08460	0.65	+0.3
1,811,911	+	AMB_RS08460	0.65	+0.1
1,811,911	+	AMB_RS08460	0.65	-2.0
1,811,911	+	AMB_RS08460	0.65	-0.8
1,811,912	-	AMB_RS08460	0.65	-0.5
1,811,912	-	AMB_RS08460	0.65	+1.2
1,811,912	-	AMB_RS08460	0.65	+0.6
1,811,912	-	AMB_RS08460	0.65	-1.7
1,811,912	-	AMB_RS08460	0.65	-1.3
1,811,976	+	AMB_RS08460	0.72	+0.3
1,811,976	+	AMB_RS08460	0.72	+2.3
1,811,977	-	AMB_RS08460	0.72	-1.3
1,812,041	+	AMB_RS08460	0.79	-0.0
1,812,041	+	AMB_RS08460	0.79	-0.4
1,812,042	-	AMB_RS08460	0.79	+0.9
1,812,067	+	AMB_RS08460	0.81	+0.4
1,812,067	+	AMB_RS08460	0.81	-0.0
1,812,067	+	AMB_RS08460	0.81	+2.3
1,812,067	+	AMB_RS08460	0.81	-1.0
1,812,067	+	AMB_RS08460	0.81	+1.3
1,812,068	-	AMB_RS08460	0.81	-0.0
1,812,068	-	AMB_RS08460	0.81	-0.2
1,812,068	-	AMB_RS08460	0.81	-0.1
1,812,133	+	AMB_RS08460	0.88	-0.7
1,812,133	+	AMB_RS08460	0.88	+1.0
1,812,133	+	AMB_RS08460	0.88	-0.1
1,812,134	-	AMB_RS08460	0.88	-1.3
1,812,134	-	AMB_RS08460	0.88	+0.5
1,812,134	-	AMB_RS08460	0.88	-0.6

Or see this region's nucleotide sequence