Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08385

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08380 and AMB_RS08385 are separated by 72 nucleotidesAMB_RS08385 and AMB_RS08390 are separated by 144 nucleotidesAMB_RS08390 and AMB_RS08395 are separated by 89 nucleotidesAMB_RS08395 and AMB_RS08400 overlap by 4 nucleotides AMB_RS08380: AMB_RS08380 - sigma-54-dependent Fis family transcriptional regulator, at 1,794,388 to 1,795,725 _RS08380 AMB_RS08385: AMB_RS08385 - sensor histidine kinase, at 1,795,798 to 1,797,618 _RS08385 AMB_RS08390: AMB_RS08390 - septum formation initiator, at 1,797,763 to 1,798,029 _RS08390 AMB_RS08395: AMB_RS08395 - hypothetical protein, at 1,798,119 to 1,798,574 _RS08395 AMB_RS08400: AMB_RS08400 - ATP-sensitive inward rectifier potassium channel 10, at 1,798,571 to 1,799,446 _RS08400 Position (kb) 1795 1796 1797 1798Strain fitness (log2 ratio) -1 0 1at 1794.821 kb on + strand, within AMB_RS08380at 1794.821 kb on + strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1795.430 kb on + strand, within AMB_RS08380at 1795.468 kb on - strand, within AMB_RS08380at 1795.966 kb on + strandat 1795.966 kb on + strandat 1795.967 kb on - strandat 1796.006 kb on - strand, within AMB_RS08385at 1796.131 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.206 kb on + strand, within AMB_RS08385at 1796.206 kb on + strand, within AMB_RS08385at 1796.206 kb on + strand, within AMB_RS08385at 1796.207 kb on - strand, within AMB_RS08385at 1796.207 kb on - strand, within AMB_RS08385at 1796.222 kb on - strand, within AMB_RS08385at 1796.294 kb on - strand, within AMB_RS08385at 1796.462 kb on - strand, within AMB_RS08385at 1796.462 kb on - strand, within AMB_RS08385at 1796.522 kb on - strand, within AMB_RS08385at 1796.522 kb on - strand, within AMB_RS08385at 1796.660 kb on - strand, within AMB_RS08385at 1796.660 kb on - strand, within AMB_RS08385at 1796.660 kb on - strand, within AMB_RS08385at 1796.752 kb on + strand, within AMB_RS08385at 1796.752 kb on + strand, within AMB_RS08385at 1796.753 kb on - strand, within AMB_RS08385at 1796.753 kb on - strand, within AMB_RS08385at 1797.242 kb on + strand, within AMB_RS08385at 1797.242 kb on + strand, within AMB_RS08385at 1797.242 kb on + strand, within AMB_RS08385at 1797.242 kb on + strand, within AMB_RS08385at 1797.243 kb on - strand, within AMB_RS08385at 1797.243 kb on - strand, within AMB_RS08385at 1797.493 kb on + strandat 1797.602 kb on + strandat 1797.603 kb on - strandat 1798.028 kb on - strandat 1798.120 kb on + strandat 1798.120 kb on + strandat 1798.235 kb on - strand, within AMB_RS08395at 1798.423 kb on + strand, within AMB_RS08395at 1798.424 kb on - strand, within AMB_RS08395at 1798.424 kb on - strand, within AMB_RS08395at 1798.477 kb on + strand, within AMB_RS08395at 1798.478 kb on - strand, within AMB_RS08395at 1798.478 kb on - strand, within AMB_RS08395

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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1,794,821 + AMB_RS08380 0.32 +0.1
1,794,821 + AMB_RS08380 0.32 +0.3
1,794,822 - AMB_RS08380 0.32 +0.1
1,794,822 - AMB_RS08380 0.32 -0.5
1,794,822 - AMB_RS08380 0.32 +0.1
1,794,822 - AMB_RS08380 0.32 +0.5
1,795,430 + AMB_RS08380 0.78 -0.6
1,795,468 - AMB_RS08380 0.81 -0.3
1,795,966 + -0.6
1,795,966 + +1.6
1,795,967 - +0.0
1,796,006 - AMB_RS08385 0.11 -0.0
1,796,131 + AMB_RS08385 0.18 +0.2
1,796,191 + AMB_RS08385 0.22 +0.4
1,796,191 + AMB_RS08385 0.22 +0.3
1,796,191 + AMB_RS08385 0.22 -0.3
1,796,191 + AMB_RS08385 0.22 -0.2
1,796,191 + AMB_RS08385 0.22 +0.4
1,796,191 + AMB_RS08385 0.22 +0.0
1,796,191 + AMB_RS08385 0.22 -0.7
1,796,191 + AMB_RS08385 0.22 -0.2
1,796,191 + AMB_RS08385 0.22 -0.7
1,796,191 + AMB_RS08385 0.22 +0.1
1,796,191 + AMB_RS08385 0.22 +0.2
1,796,191 + AMB_RS08385 0.22 -0.6
1,796,192 - AMB_RS08385 0.22 -0.8
1,796,192 - AMB_RS08385 0.22 -0.3
1,796,192 - AMB_RS08385 0.22 -0.8
1,796,192 - AMB_RS08385 0.22 +0.1
1,796,192 - AMB_RS08385 0.22 -0.5
1,796,192 - AMB_RS08385 0.22 -0.7
1,796,192 - AMB_RS08385 0.22 -0.9
1,796,192 - AMB_RS08385 0.22 -1.7
1,796,206 + AMB_RS08385 0.22 +0.4
1,796,206 + AMB_RS08385 0.22 -0.4
1,796,206 + AMB_RS08385 0.22 +0.0
1,796,207 - AMB_RS08385 0.22 +0.1
1,796,207 - AMB_RS08385 0.22 -0.2
1,796,222 - AMB_RS08385 0.23 -0.1
1,796,294 - AMB_RS08385 0.27 -1.4
1,796,462 - AMB_RS08385 0.36 -0.1
1,796,462 - AMB_RS08385 0.36 +0.1
1,796,522 - AMB_RS08385 0.40 +0.2
1,796,522 - AMB_RS08385 0.40 +0.2
1,796,660 - AMB_RS08385 0.47 -0.6
1,796,660 - AMB_RS08385 0.47 -0.1
1,796,660 - AMB_RS08385 0.47 +0.1
1,796,752 + AMB_RS08385 0.52 -0.1
1,796,752 + AMB_RS08385 0.52 +0.8
1,796,753 - AMB_RS08385 0.52 +0.4
1,796,753 - AMB_RS08385 0.52 -1.1
1,797,242 + AMB_RS08385 0.79 +0.9
1,797,242 + AMB_RS08385 0.79 +0.7
1,797,242 + AMB_RS08385 0.79 -0.3
1,797,242 + AMB_RS08385 0.79 -0.3
1,797,243 - AMB_RS08385 0.79 -0.7
1,797,243 - AMB_RS08385 0.79 -0.1
1,797,493 + +0.7
1,797,602 + +0.3
1,797,603 - -1.7
1,798,028 - +0.6
1,798,120 + -0.1
1,798,120 + +0.8
1,798,235 - AMB_RS08395 0.25 -0.5
1,798,423 + AMB_RS08395 0.67 -0.6
1,798,424 - AMB_RS08395 0.67 -0.1
1,798,424 - AMB_RS08395 0.67 +0.3
1,798,477 + AMB_RS08395 0.79 +0.4
1,798,478 - AMB_RS08395 0.79 +0.0
1,798,478 - AMB_RS08395 0.79 +0.7

Or see this region's nucleotide sequence