Experiment: without_iron3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07585 and AMB_RS24255 are separated by 368 nucleotides AMB_RS24255 and AMB_RS07595 are separated by 479 nucleotides AMB_RS07595 and AMB_RS07600 are separated by 95 nucleotides AMB_RS07600 and AMB_RS07605 are separated by 39 nucleotides AMB_RS07605 and AMB_RS07610 are separated by 4 nucleotides AMB_RS07610 and AMB_RS07615 are separated by 88 nucleotides
AMB_RS07585: AMB_RS07585 - hypothetical protein, at 1,640,043 to 1,640,663
_RS07585
AMB_RS24255: AMB_RS24255 - RNA-binding protein, at 1,641,032 to 1,641,145
_RS24255
AMB_RS07595: AMB_RS07595 - XRE family transcriptional regulator, at 1,641,625 to 1,642,128
_RS07595
AMB_RS07600: AMB_RS07600 - hypothetical protein, at 1,642,224 to 1,642,451
_RS07600
AMB_RS07605: AMB_RS07605 - hypothetical protein, at 1,642,491 to 1,642,673
_RS07605
AMB_RS07610: AMB_RS07610 - hypothetical protein, at 1,642,678 to 1,642,893
_RS07610
AMB_RS07615: AMB_RS07615 - hypothetical protein, at 1,642,982 to 1,643,251
_RS07615
Position (kb) 1641
1642
1643 Strain fitness (log2 ratio) -1
0
1
2 at 1641.022 kb on - strand at 1641.022 kb on - strand at 1641.274 kb on + strand at 1641.400 kb on - strand at 1641.400 kb on - strand at 1641.400 kb on - strand at 1641.400 kb on - strand at 1641.400 kb on - strand at 1641.439 kb on - strand at 1642.156 kb on - strand at 1642.242 kb on + strand at 1642.322 kb on + strand, within AMB_RS07600 at 1642.322 kb on + strand, within AMB_RS07600 at 1642.323 kb on - strand, within AMB_RS07600 at 1642.481 kb on - strand at 1642.481 kb on - strand at 1642.603 kb on + strand, within AMB_RS07605 at 1642.603 kb on + strand, within AMB_RS07605 at 1643.058 kb on - strand, within AMB_RS07615
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron3 remove 1,641,022 - -0.9 1,641,022 - -0.8 1,641,274 + +0.0 1,641,400 - +1.2 1,641,400 - +0.1 1,641,400 - -0.5 1,641,400 - +2.3 1,641,400 - -1.6 1,641,439 - +0.8 1,642,156 - -0.4 1,642,242 + +0.4 1,642,322 + AMB_RS07600 0.43 -0.8 1,642,322 + AMB_RS07600 0.43 -0.7 1,642,323 - AMB_RS07600 0.43 -0.4 1,642,481 - -0.1 1,642,481 - -0.1 1,642,603 + AMB_RS07605 0.61 -0.3 1,642,603 + AMB_RS07605 0.61 -0.1 1,643,058 - AMB_RS07615 0.28 -1.0
Or see this region's nucleotide sequence