Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05400

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05390 and AMB_RS23990 are separated by 11 nucleotidesAMB_RS23990 and AMB_RS23995 are separated by 6 nucleotidesAMB_RS23995 and AMB_RS05400 are separated by 123 nucleotidesAMB_RS05400 and AMB_RS05405 are separated by 5 nucleotidesAMB_RS05405 and AMB_RS05410 are separated by 7 nucleotides AMB_RS05390: AMB_RS05390 - Rrf2 family transcriptional regulator, at 1,117,149 to 1,117,598 _RS05390 AMB_RS23990: AMB_RS23990 - aminotransferase class V-fold PLP-dependent enzyme, at 1,117,610 to 1,118,194 _RS23990 AMB_RS23995: AMB_RS23995 - hypothetical protein, at 1,118,201 to 1,118,419 _RS23995 AMB_RS05400: AMB_RS05400 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 1,118,543 to 1,120,267 _RS05400 AMB_RS05405: AMB_RS05405 - 4Fe-4S dicluster domain-containing protein, at 1,120,273 to 1,120,494 _RS05405 AMB_RS05410: AMB_RS05410 - HEAT repeat-containing protein, at 1,120,502 to 1,121,437 _RS05410 Position (kb) 1118 1119 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1117.587 kb on + strandat 1117.587 kb on + strandat 1117.601 kb on + strandat 1117.601 kb on + strandat 1117.726 kb on + strand, within AMB_RS23990at 1117.726 kb on + strand, within AMB_RS23990at 1117.726 kb on + strand, within AMB_RS23990at 1117.726 kb on + strand, within AMB_RS23990at 1117.726 kb on + strand, within AMB_RS23990at 1117.726 kb on + strand, within AMB_RS23990at 1117.727 kb on - strand, within AMB_RS23990at 1117.727 kb on - strand, within AMB_RS23990at 1117.727 kb on - strand, within AMB_RS23990at 1117.727 kb on - strand, within AMB_RS23990at 1118.132 kb on + strand, within AMB_RS23990at 1118.132 kb on + strand, within AMB_RS23990at 1118.132 kb on + strand, within AMB_RS23990at 1118.133 kb on - strand, within AMB_RS23990at 1118.133 kb on - strand, within AMB_RS23990at 1118.133 kb on - strand, within AMB_RS23990at 1118.192 kb on + strandat 1118.192 kb on + strandat 1118.193 kb on - strandat 1118.193 kb on - strandat 1118.193 kb on - strandat 1118.456 kb on + strandat 1118.456 kb on + strandat 1118.456 kb on + strandat 1118.456 kb on + strandat 1118.456 kb on + strandat 1118.456 kb on + strandat 1118.457 kb on - strandat 1118.457 kb on - strandat 1118.457 kb on - strandat 1118.457 kb on - strandat 1118.750 kb on + strand, within AMB_RS05400at 1118.750 kb on + strand, within AMB_RS05400at 1118.751 kb on - strand, within AMB_RS05400at 1118.751 kb on - strand, within AMB_RS05400at 1118.751 kb on - strand, within AMB_RS05400at 1118.751 kb on - strand, within AMB_RS05400at 1118.751 kb on - strand, within AMB_RS05400at 1118.809 kb on + strand, within AMB_RS05400at 1118.810 kb on + strand, within AMB_RS05400at 1118.811 kb on - strand, within AMB_RS05400at 1118.811 kb on - strand, within AMB_RS05400at 1118.921 kb on + strand, within AMB_RS05400at 1118.921 kb on + strand, within AMB_RS05400at 1118.921 kb on + strand, within AMB_RS05400at 1118.921 kb on + strand, within AMB_RS05400at 1118.921 kb on + strand, within AMB_RS05400at 1118.921 kb on + strand, within AMB_RS05400at 1118.922 kb on - strand, within AMB_RS05400at 1118.922 kb on - strand, within AMB_RS05400at 1118.946 kb on - strand, within AMB_RS05400at 1118.946 kb on - strand, within AMB_RS05400at 1119.161 kb on + strand, within AMB_RS05400at 1119.176 kb on + strand, within AMB_RS05400at 1119.177 kb on - strand, within AMB_RS05400at 1119.177 kb on - strand, within AMB_RS05400at 1119.177 kb on - strand, within AMB_RS05400at 1119.177 kb on - strand, within AMB_RS05400at 1119.206 kb on + strand, within AMB_RS05400at 1119.207 kb on - strand, within AMB_RS05400at 1119.218 kb on + strand, within AMB_RS05400at 1119.219 kb on - strand, within AMB_RS05400at 1119.219 kb on - strand, within AMB_RS05400at 1119.281 kb on + strand, within AMB_RS05400at 1119.281 kb on + strand, within AMB_RS05400at 1119.282 kb on - strand, within AMB_RS05400at 1119.282 kb on - strand, within AMB_RS05400at 1119.283 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.303 kb on - strand, within AMB_RS05400at 1119.493 kb on + strand, within AMB_RS05400at 1119.493 kb on + strand, within AMB_RS05400at 1119.653 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.690 kb on - strand, within AMB_RS05400at 1119.690 kb on - strand, within AMB_RS05400at 1119.690 kb on - strand, within AMB_RS05400at 1119.744 kb on - strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.858 kb on - strand, within AMB_RS05400at 1119.858 kb on - strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.082 kb on + strand, within AMB_RS05400at 1120.196 kb on + strandat 1120.197 kb on - strandat 1120.197 kb on - strandat 1120.197 kb on - strandat 1120.197 kb on - strandat 1120.232 kb on + strandat 1120.232 kb on + strandat 1120.232 kb on + strandat 1120.233 kb on - strandat 1120.233 kb on - strandat 1120.233 kb on - strandat 1120.233 kb on - strandat 1120.252 kb on + strandat 1120.408 kb on + strand, within AMB_RS05405at 1120.409 kb on - strand, within AMB_RS05405at 1120.480 kb on + strandat 1121.202 kb on - strand, within AMB_RS05410at 1121.245 kb on + strand, within AMB_RS05410

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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1,117,587 + +0.1
1,117,587 + -1.0
1,117,601 + +1.8
1,117,601 + +0.2
1,117,726 + AMB_RS23990 0.20 -0.0
1,117,726 + AMB_RS23990 0.20 -0.1
1,117,726 + AMB_RS23990 0.20 -0.1
1,117,726 + AMB_RS23990 0.20 -0.9
1,117,726 + AMB_RS23990 0.20 -0.3
1,117,726 + AMB_RS23990 0.20 -0.2
1,117,727 - AMB_RS23990 0.20 +0.4
1,117,727 - AMB_RS23990 0.20 -1.4
1,117,727 - AMB_RS23990 0.20 -0.1
1,117,727 - AMB_RS23990 0.20 -0.8
1,118,132 + AMB_RS23990 0.89 -0.6
1,118,132 + AMB_RS23990 0.89 +1.0
1,118,132 + AMB_RS23990 0.89 +0.7
1,118,133 - AMB_RS23990 0.89 +0.3
1,118,133 - AMB_RS23990 0.89 +0.3
1,118,133 - AMB_RS23990 0.89 -2.2
1,118,192 + -0.2
1,118,192 + -0.6
1,118,193 - +0.4
1,118,193 - +0.1
1,118,193 - +0.0
1,118,456 + +0.3
1,118,456 + +1.4
1,118,456 + +0.0
1,118,456 + +0.2
1,118,456 + -0.3
1,118,456 + +0.1
1,118,457 - -0.3
1,118,457 - -0.4
1,118,457 - -0.3
1,118,457 - +0.5
1,118,750 + AMB_RS05400 0.12 -1.2
1,118,750 + AMB_RS05400 0.12 +1.4
1,118,751 - AMB_RS05400 0.12 -0.4
1,118,751 - AMB_RS05400 0.12 -0.6
1,118,751 - AMB_RS05400 0.12 -1.2
1,118,751 - AMB_RS05400 0.12 -0.1
1,118,751 - AMB_RS05400 0.12 -0.5
1,118,809 + AMB_RS05400 0.15 +0.4
1,118,810 + AMB_RS05400 0.15 -0.3
1,118,811 - AMB_RS05400 0.16 +0.6
1,118,811 - AMB_RS05400 0.16 -1.2
1,118,921 + AMB_RS05400 0.22 -0.2
1,118,921 + AMB_RS05400 0.22 -0.8
1,118,921 + AMB_RS05400 0.22 -0.2
1,118,921 + AMB_RS05400 0.22 +0.5
1,118,921 + AMB_RS05400 0.22 -1.6
1,118,921 + AMB_RS05400 0.22 -0.0
1,118,922 - AMB_RS05400 0.22 -0.6
1,118,922 - AMB_RS05400 0.22 -3.4
1,118,946 - AMB_RS05400 0.23 +0.4
1,118,946 - AMB_RS05400 0.23 -0.4
1,119,161 + AMB_RS05400 0.36 +0.2
1,119,176 + AMB_RS05400 0.37 -0.7
1,119,177 - AMB_RS05400 0.37 +1.0
1,119,177 - AMB_RS05400 0.37 +1.0
1,119,177 - AMB_RS05400 0.37 -1.3
1,119,177 - AMB_RS05400 0.37 +0.9
1,119,206 + AMB_RS05400 0.38 +0.6
1,119,207 - AMB_RS05400 0.38 +0.4
1,119,218 + AMB_RS05400 0.39 +0.1
1,119,219 - AMB_RS05400 0.39 -0.1
1,119,219 - AMB_RS05400 0.39 +0.3
1,119,281 + AMB_RS05400 0.43 -1.6
1,119,281 + AMB_RS05400 0.43 +0.2
1,119,282 - AMB_RS05400 0.43 -1.9
1,119,282 - AMB_RS05400 0.43 -1.2
1,119,283 + AMB_RS05400 0.43 +0.1
1,119,302 + AMB_RS05400 0.44 -0.5
1,119,302 + AMB_RS05400 0.44 -0.3
1,119,302 + AMB_RS05400 0.44 -0.5
1,119,302 + AMB_RS05400 0.44 -0.6
1,119,302 + AMB_RS05400 0.44 -0.1
1,119,303 - AMB_RS05400 0.44 -0.1
1,119,493 + AMB_RS05400 0.55 +0.4
1,119,493 + AMB_RS05400 0.55 +0.1
1,119,653 + AMB_RS05400 0.64 -1.4
1,119,689 + AMB_RS05400 0.66 -0.3
1,119,689 + AMB_RS05400 0.66 -1.6
1,119,689 + AMB_RS05400 0.66 -0.6
1,119,689 + AMB_RS05400 0.66 +0.4
1,119,689 + AMB_RS05400 0.66 +0.2
1,119,689 + AMB_RS05400 0.66 -1.1
1,119,689 + AMB_RS05400 0.66 -0.3
1,119,689 + AMB_RS05400 0.66 +0.1
1,119,690 - AMB_RS05400 0.66 -1.7
1,119,690 - AMB_RS05400 0.66 -0.6
1,119,690 - AMB_RS05400 0.66 +1.6
1,119,744 - AMB_RS05400 0.70 -0.1
1,119,857 + AMB_RS05400 0.76 -0.1
1,119,857 + AMB_RS05400 0.76 +1.4
1,119,857 + AMB_RS05400 0.76 -0.1
1,119,857 + AMB_RS05400 0.76 -1.0
1,119,858 - AMB_RS05400 0.76 -0.0
1,119,858 - AMB_RS05400 0.76 +0.4
1,120,010 + AMB_RS05400 0.85 -0.3
1,120,010 + AMB_RS05400 0.85 -0.2
1,120,010 + AMB_RS05400 0.85 -0.2
1,120,010 + AMB_RS05400 0.85 -0.4
1,120,010 + AMB_RS05400 0.85 -0.2
1,120,011 - AMB_RS05400 0.85 -0.1
1,120,011 - AMB_RS05400 0.85 -0.3
1,120,011 - AMB_RS05400 0.85 -0.3
1,120,011 - AMB_RS05400 0.85 -0.4
1,120,011 - AMB_RS05400 0.85 -0.3
1,120,082 + AMB_RS05400 0.89 -0.9
1,120,196 + -0.2
1,120,197 - -0.2
1,120,197 - +0.8
1,120,197 - -0.8
1,120,197 - +2.1
1,120,232 + -1.6
1,120,232 + -0.0
1,120,232 + +0.4
1,120,233 - -0.0
1,120,233 - +0.1
1,120,233 - -0.5
1,120,233 - -0.5
1,120,252 + +0.1
1,120,408 + AMB_RS05405 0.61 -0.7
1,120,409 - AMB_RS05405 0.61 +1.4
1,120,480 + +0.4
1,121,202 - AMB_RS05410 0.75 +0.6
1,121,245 + AMB_RS05410 0.79 -0.2

Or see this region's nucleotide sequence