Experiment: without_iron3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04575 and AMB_RS04580 are separated by 473 nucleotides AMB_RS04580 and AMB_RS04585 are separated by 44 nucleotides AMB_RS04585 and AMB_RS04590 are separated by 4 nucleotides
AMB_RS04575: AMB_RS04575 - DNA-binding response regulator, at 958,560 to 959,210
_RS04575
AMB_RS04580: AMB_RS04580 - DUF192 domain-containing protein, at 959,684 to 960,178
_RS04580
AMB_RS04585: AMB_RS04585 - tRNA-Pro, at 960,223 to 960,299
_RS04585
AMB_RS04590: AMB_RS04590 - hypothetical protein, at 960,304 to 961,458
_RS04590
Position (kb) 959
960
961 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 959.004 kb on + strand, within AMB_RS04575 at 959.042 kb on + strand, within AMB_RS04575 at 959.224 kb on + strand at 959.225 kb on - strand at 959.362 kb on - strand at 959.412 kb on + strand at 959.543 kb on + strand at 959.574 kb on + strand at 959.646 kb on - strand at 959.990 kb on - strand, within AMB_RS04580 at 959.990 kb on - strand, within AMB_RS04580 at 959.990 kb on - strand, within AMB_RS04580 at 959.990 kb on - strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.557 kb on + strand, within AMB_RS04590 at 960.557 kb on + strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.558 kb on - strand, within AMB_RS04590 at 960.856 kb on - strand, within AMB_RS04590 at 960.910 kb on + strand, within AMB_RS04590 at 960.911 kb on - strand, within AMB_RS04590 at 960.911 kb on - strand, within AMB_RS04590
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron3 remove 959,004 + AMB_RS04575 0.68 -0.1 959,042 + AMB_RS04575 0.74 +3.0 959,224 + -0.7 959,225 - -0.2 959,362 - +0.4 959,412 + -1.5 959,543 + -0.1 959,574 + -0.3 959,646 - -0.9 959,990 - AMB_RS04580 0.62 -0.5 959,990 - AMB_RS04580 0.62 -0.2 959,990 - AMB_RS04580 0.62 -0.6 959,990 - AMB_RS04580 0.62 -1.1 960,035 + AMB_RS04580 0.71 -0.4 960,035 + AMB_RS04580 0.71 -0.5 960,035 + AMB_RS04580 0.71 +0.5 960,035 + AMB_RS04580 0.71 -0.2 960,035 + AMB_RS04580 0.71 +1.2 960,035 + AMB_RS04580 0.71 -0.4 960,035 + AMB_RS04580 0.71 +0.4 960,035 + AMB_RS04580 0.71 +0.6 960,035 + AMB_RS04580 0.71 +1.4 960,035 + AMB_RS04580 0.71 -0.1 960,036 - AMB_RS04580 0.71 -0.0 960,036 - AMB_RS04580 0.71 -0.5 960,036 - AMB_RS04580 0.71 +0.2 960,036 - AMB_RS04580 0.71 -0.2 960,036 - AMB_RS04580 0.71 +1.1 960,036 - AMB_RS04580 0.71 -1.9 960,557 + AMB_RS04590 0.22 -0.1 960,557 + AMB_RS04590 0.22 -1.2 960,558 - AMB_RS04590 0.22 -0.6 960,558 - AMB_RS04590 0.22 -0.7 960,558 - AMB_RS04590 0.22 +0.6 960,558 - AMB_RS04590 0.22 -1.2 960,558 - AMB_RS04590 0.22 -0.1 960,558 - AMB_RS04590 0.22 -0.1 960,558 - AMB_RS04590 0.22 -0.4 960,558 - AMB_RS04590 0.22 -0.8 960,558 - AMB_RS04590 0.22 -0.3 960,856 - AMB_RS04590 0.48 +2.0 960,910 + AMB_RS04590 0.52 -0.2 960,911 - AMB_RS04590 0.53 -0.4 960,911 - AMB_RS04590 0.53 -0.1
Or see this region's nucleotide sequence