Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04330

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04320 and AMB_RS04325 are separated by 3 nucleotidesAMB_RS04325 and AMB_RS04330 overlap by 11 nucleotidesAMB_RS04330 and AMB_RS04335 are separated by 87 nucleotidesAMB_RS04335 and AMB_RS04340 are separated by 70 nucleotides AMB_RS04320: AMB_RS04320 - DNA-binding response regulator, at 909,806 to 910,528 _RS04320 AMB_RS04325: AMB_RS04325 - TetR/AcrR family transcriptional regulator, at 910,532 to 911,140 _RS04325 AMB_RS04330: AMB_RS04330 - xanthine and CO dehydrogenase maturation factor, at 911,130 to 911,909 _RS04330 AMB_RS04335: AMB_RS04335 - PaaI family thioesterase, at 911,997 to 912,407 _RS04335 AMB_RS04340: AMB_RS04340 - enoyl-CoA hydratase, at 912,478 to 913,263 _RS04340 Position (kb) 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 910.379 kb on + strand, within AMB_RS04320at 910.390 kb on + strand, within AMB_RS04320at 910.391 kb on - strand, within AMB_RS04320at 910.391 kb on - strand, within AMB_RS04320at 910.391 kb on - strand, within AMB_RS04320at 910.481 kb on + strandat 910.482 kb on - strandat 910.482 kb on - strandat 910.482 kb on - strandat 910.527 kb on - strandat 910.604 kb on + strand, within AMB_RS04325at 910.605 kb on - strand, within AMB_RS04325at 910.605 kb on - strand, within AMB_RS04325at 910.676 kb on + strand, within AMB_RS04325at 910.676 kb on + strand, within AMB_RS04325at 910.676 kb on + strand, within AMB_RS04325at 910.677 kb on - strand, within AMB_RS04325at 910.677 kb on - strand, within AMB_RS04325at 910.709 kb on + strand, within AMB_RS04325at 910.710 kb on - strand, within AMB_RS04325at 910.729 kb on + strand, within AMB_RS04325at 910.729 kb on + strand, within AMB_RS04325at 910.829 kb on + strand, within AMB_RS04325at 910.829 kb on + strand, within AMB_RS04325at 910.830 kb on - strand, within AMB_RS04325at 910.830 kb on - strand, within AMB_RS04325at 910.899 kb on - strand, within AMB_RS04325at 910.899 kb on - strand, within AMB_RS04325at 910.929 kb on - strand, within AMB_RS04325at 911.009 kb on + strand, within AMB_RS04325at 911.009 kb on + strand, within AMB_RS04325at 911.010 kb on - strand, within AMB_RS04325at 911.093 kb on + strandat 911.093 kb on + strandat 911.094 kb on - strandat 911.094 kb on - strandat 911.094 kb on - strandat 911.274 kb on + strand, within AMB_RS04330at 911.274 kb on + strand, within AMB_RS04330at 911.274 kb on + strand, within AMB_RS04330at 911.275 kb on - strand, within AMB_RS04330at 911.275 kb on - strand, within AMB_RS04330at 911.643 kb on + strand, within AMB_RS04330at 911.644 kb on - strand, within AMB_RS04330at 911.908 kb on - strandat 911.908 kb on - strandat 911.986 kb on - strandat 911.986 kb on - strandat 911.986 kb on - strandat 911.986 kb on - strandat 912.010 kb on + strandat 912.010 kb on + strandat 912.010 kb on + strandat 912.010 kb on + strandat 912.011 kb on - strandat 912.211 kb on + strand, within AMB_RS04335at 912.353 kb on + strand, within AMB_RS04335at 912.421 kb on + strandat 912.477 kb on + strandat 912.477 kb on + strandat 912.477 kb on + strandat 912.477 kb on + strandat 912.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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910,379 + AMB_RS04320 0.79 +0.1
910,390 + AMB_RS04320 0.81 -0.8
910,391 - AMB_RS04320 0.81 -0.8
910,391 - AMB_RS04320 0.81 -1.2
910,391 - AMB_RS04320 0.81 -0.8
910,481 + +0.3
910,482 - -1.3
910,482 - -0.4
910,482 - -0.2
910,527 - -0.5
910,604 + AMB_RS04325 0.12 -1.2
910,605 - AMB_RS04325 0.12 -0.6
910,605 - AMB_RS04325 0.12 -0.6
910,676 + AMB_RS04325 0.24 -0.2
910,676 + AMB_RS04325 0.24 -1.2
910,676 + AMB_RS04325 0.24 -1.4
910,677 - AMB_RS04325 0.24 -0.5
910,677 - AMB_RS04325 0.24 -0.6
910,709 + AMB_RS04325 0.29 -1.9
910,710 - AMB_RS04325 0.29 +2.0
910,729 + AMB_RS04325 0.32 -0.4
910,729 + AMB_RS04325 0.32 +0.0
910,829 + AMB_RS04325 0.49 +0.0
910,829 + AMB_RS04325 0.49 -3.4
910,830 - AMB_RS04325 0.49 +0.2
910,830 - AMB_RS04325 0.49 +1.0
910,899 - AMB_RS04325 0.60 -0.2
910,899 - AMB_RS04325 0.60 +1.0
910,929 - AMB_RS04325 0.65 -0.9
911,009 + AMB_RS04325 0.78 -0.1
911,009 + AMB_RS04325 0.78 -1.1
911,010 - AMB_RS04325 0.78 -0.1
911,093 + -0.3
911,093 + -2.4
911,094 - -0.6
911,094 - +0.6
911,094 - -0.6
911,274 + AMB_RS04330 0.18 +0.2
911,274 + AMB_RS04330 0.18 -0.1
911,274 + AMB_RS04330 0.18 +0.4
911,275 - AMB_RS04330 0.19 -0.6
911,275 - AMB_RS04330 0.19 -0.6
911,643 + AMB_RS04330 0.66 +2.5
911,644 - AMB_RS04330 0.66 +1.0
911,908 - -0.4
911,908 - +0.3
911,986 - +0.7
911,986 - -0.2
911,986 - +0.8
911,986 - +0.5
912,010 + -0.0
912,010 + -0.2
912,010 + +0.1
912,010 + -0.3
912,011 - -0.1
912,211 + AMB_RS04335 0.52 -0.0
912,353 + AMB_RS04335 0.87 +0.4
912,421 + -0.3
912,477 + +0.1
912,477 + -1.8
912,477 + +0.2
912,477 + -0.6
912,478 - +0.6

Or see this region's nucleotide sequence