Experiment: without_iron3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04185 and AMB_RS04190 are separated by 254 nucleotides AMB_RS04190 and AMB_RS04195 overlap by 4 nucleotides AMB_RS04195 and AMB_RS04200 are separated by 21 nucleotides
AMB_RS04185: AMB_RS04185 - IMP dehydrogenase, at 876,959 to 880,285
_RS04185
AMB_RS04190: AMB_RS04190 - hypothetical protein, at 880,540 to 882,999
_RS04190
AMB_RS04195: AMB_RS04195 - transglutaminase family protein, at 882,996 to 883,871
_RS04195
AMB_RS04200: AMB_RS04200 - hypothetical protein, at 883,893 to 884,099
_RS04200
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.590 kb on + strand, within AMB_RS04185 at 879.590 kb on + strand, within AMB_RS04185 at 879.590 kb on + strand, within AMB_RS04185 at 879.590 kb on + strand, within AMB_RS04185 at 879.590 kb on + strand, within AMB_RS04185 at 879.592 kb on + strand, within AMB_RS04185 at 879.592 kb on + strand, within AMB_RS04185 at 879.857 kb on + strand, within AMB_RS04185 at 879.857 kb on + strand, within AMB_RS04185 at 880.046 kb on - strand at 880.106 kb on + strand at 880.106 kb on + strand at 880.106 kb on + strand at 880.106 kb on + strand at 880.106 kb on + strand at 880.107 kb on - strand at 880.136 kb on + strand at 880.160 kb on + strand at 880.160 kb on + strand at 880.160 kb on + strand at 880.161 kb on - strand at 880.261 kb on + strand at 880.279 kb on - strand at 880.283 kb on + strand at 880.284 kb on - strand at 880.376 kb on + strand at 880.376 kb on + strand at 880.409 kb on + strand at 880.594 kb on - strand at 880.682 kb on - strand at 881.200 kb on + strand, within AMB_RS04190 at 881.200 kb on + strand, within AMB_RS04190 at 881.284 kb on + strand, within AMB_RS04190 at 883.027 kb on - strand at 883.027 kb on - strand at 883.032 kb on + strand at 883.608 kb on + strand, within AMB_RS04195 at 883.870 kb on - strand at 883.870 kb on - strand at 883.900 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron3 remove 879,590 + AMB_RS04185 0.79 -1.4 879,590 + AMB_RS04185 0.79 -3.6 879,590 + AMB_RS04185 0.79 -0.4 879,590 + AMB_RS04185 0.79 +0.4 879,590 + AMB_RS04185 0.79 +0.0 879,592 + AMB_RS04185 0.79 -0.3 879,592 + AMB_RS04185 0.79 -1.0 879,857 + AMB_RS04185 0.87 +2.4 879,857 + AMB_RS04185 0.87 -0.2 880,046 - -0.8 880,106 + -1.3 880,106 + -0.1 880,106 + -0.3 880,106 + +0.1 880,106 + -0.8 880,107 - -0.4 880,136 + -1.1 880,160 + -0.3 880,160 + +0.0 880,160 + -1.0 880,161 - -0.5 880,261 + -2.0 880,279 - -1.8 880,283 + +0.3 880,284 - -0.0 880,376 + +0.3 880,376 + +0.2 880,409 + +1.2 880,594 - -0.9 880,682 - -1.2 881,200 + AMB_RS04190 0.27 -1.2 881,200 + AMB_RS04190 0.27 +1.0 881,284 + AMB_RS04190 0.30 -0.5 883,027 - -0.6 883,027 - -1.9 883,032 + +1.2 883,608 + AMB_RS04195 0.70 -1.8 883,870 - -0.2 883,870 - +0.1 883,900 + +1.4
Or see this region's nucleotide sequence