Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03605

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03600 and AMB_RS03605 are separated by 58 nucleotidesAMB_RS03605 and AMB_RS03610 are separated by 17 nucleotidesAMB_RS03610 and AMB_RS03615 are separated by 12 nucleotidesAMB_RS03615 and AMB_RS03620 overlap by 4 nucleotides AMB_RS03600: AMB_RS03600 - carbamoyl-phosphate synthase small subunit, at 756,213 to 757,418 _RS03600 AMB_RS03605: AMB_RS03605 - carbamoyl-phosphate synthase large subunit, at 757,477 to 760,734 _RS03605 AMB_RS03610: AMB_RS03610 - transcription elongation factor GreA, at 760,752 to 761,225 _RS03610 AMB_RS03615: AMB_RS03615 - hypothetical protein, at 761,238 to 761,660 _RS03615 AMB_RS03620: AMB_RS03620 - iron-dependent peroxidase, at 761,657 to 762,559 _RS03620 Position (kb) 757 758 759 760 761Strain fitness (log2 ratio) -3 -2 -1 0 1at 760.714 kb on + strandat 760.719 kb on + strandat 760.720 kb on - strandat 760.720 kb on - strandat 760.740 kb on + strandat 760.741 kb on - strandat 760.805 kb on + strand, within AMB_RS03610at 760.805 kb on + strand, within AMB_RS03610at 760.805 kb on + strand, within AMB_RS03610at 760.805 kb on + strand, within AMB_RS03610at 760.805 kb on + strand, within AMB_RS03610at 760.806 kb on - strand, within AMB_RS03610at 760.806 kb on - strand, within AMB_RS03610at 760.806 kb on - strand, within AMB_RS03610at 760.806 kb on - strand, within AMB_RS03610at 760.806 kb on - strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.818 kb on + strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 760.819 kb on - strand, within AMB_RS03610at 761.061 kb on + strand, within AMB_RS03610at 761.061 kb on + strand, within AMB_RS03610at 761.061 kb on + strand, within AMB_RS03610at 761.061 kb on + strand, within AMB_RS03610at 761.061 kb on + strand, within AMB_RS03610at 761.061 kb on + strand, within AMB_RS03610at 761.062 kb on - strand, within AMB_RS03610at 761.062 kb on - strand, within AMB_RS03610at 761.062 kb on - strand, within AMB_RS03610at 761.062 kb on - strand, within AMB_RS03610at 761.062 kb on - strand, within AMB_RS03610at 761.062 kb on - strand, within AMB_RS03610at 761.165 kb on - strand, within AMB_RS03610at 761.165 kb on - strand, within AMB_RS03610at 761.197 kb on - strandat 761.286 kb on + strand, within AMB_RS03615at 761.286 kb on + strand, within AMB_RS03615at 761.355 kb on + strand, within AMB_RS03615at 761.356 kb on - strand, within AMB_RS03615at 761.356 kb on - strand, within AMB_RS03615at 761.395 kb on + strand, within AMB_RS03615at 761.635 kb on + strandat 761.636 kb on - strandat 761.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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760,714 + +1.4
760,719 + +0.4
760,720 - -2.2
760,720 - -0.6
760,740 + -0.2
760,741 - +0.4
760,805 + AMB_RS03610 0.11 +0.8
760,805 + AMB_RS03610 0.11 -0.5
760,805 + AMB_RS03610 0.11 +0.4
760,805 + AMB_RS03610 0.11 -0.9
760,805 + AMB_RS03610 0.11 -1.5
760,806 - AMB_RS03610 0.11 -0.6
760,806 - AMB_RS03610 0.11 -0.6
760,806 - AMB_RS03610 0.11 +0.8
760,806 - AMB_RS03610 0.11 -0.4
760,806 - AMB_RS03610 0.11 +0.8
760,818 + AMB_RS03610 0.14 +0.4
760,818 + AMB_RS03610 0.14 -1.8
760,818 + AMB_RS03610 0.14 -0.3
760,818 + AMB_RS03610 0.14 +0.8
760,818 + AMB_RS03610 0.14 +0.4
760,818 + AMB_RS03610 0.14 +1.4
760,818 + AMB_RS03610 0.14 +0.0
760,818 + AMB_RS03610 0.14 -0.7
760,818 + AMB_RS03610 0.14 -0.8
760,818 + AMB_RS03610 0.14 -1.8
760,819 - AMB_RS03610 0.14 +1.2
760,819 - AMB_RS03610 0.14 -2.1
760,819 - AMB_RS03610 0.14 -1.6
760,819 - AMB_RS03610 0.14 -0.4
760,819 - AMB_RS03610 0.14 +0.7
760,819 - AMB_RS03610 0.14 -2.9
760,819 - AMB_RS03610 0.14 +0.1
760,819 - AMB_RS03610 0.14 -0.2
761,061 + AMB_RS03610 0.65 +1.4
761,061 + AMB_RS03610 0.65 +1.0
761,061 + AMB_RS03610 0.65 -0.6
761,061 + AMB_RS03610 0.65 -1.6
761,061 + AMB_RS03610 0.65 +0.4
761,061 + AMB_RS03610 0.65 -1.7
761,062 - AMB_RS03610 0.65 -1.6
761,062 - AMB_RS03610 0.65 +0.4
761,062 - AMB_RS03610 0.65 -0.6
761,062 - AMB_RS03610 0.65 -1.2
761,062 - AMB_RS03610 0.65 -0.5
761,062 - AMB_RS03610 0.65 -0.9
761,165 - AMB_RS03610 0.87 -1.4
761,165 - AMB_RS03610 0.87 +0.2
761,197 - -1.0
761,286 + AMB_RS03615 0.11 +0.1
761,286 + AMB_RS03615 0.11 -0.4
761,355 + AMB_RS03615 0.28 -1.0
761,356 - AMB_RS03615 0.28 -1.4
761,356 - AMB_RS03615 0.28 -0.4
761,395 + AMB_RS03615 0.37 -0.5
761,635 + +0.6
761,636 - -0.4
761,636 - +0.0

Or see this region's nucleotide sequence