Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02445

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02435 and AMB_RS23135 are separated by 2 nucleotidesAMB_RS23135 and AMB_RS02445 are separated by 1 nucleotidesAMB_RS02445 and AMB_RS23880 are separated by 181 nucleotidesAMB_RS23880 and AMB_RS23140 are separated by 64 nucleotides AMB_RS02435: AMB_RS02435 - hypothetical protein, at 504,709 to 505,185 _RS02435 AMB_RS23135: AMB_RS23135 - DUF2163 domain-containing protein, at 505,188 to 506,078 _RS23135 AMB_RS02445: AMB_RS02445 - hydrolase, at 506,080 to 506,532 _RS02445 AMB_RS23880: AMB_RS23880 - RNA-binding protein, at 506,714 to 506,776 _RS23880 AMB_RS23140: AMB_RS23140 - hypothetical protein, at 506,841 to 509,726 _RS23140 Position (kb) 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 505.084 kb on + strand, within AMB_RS02435at 505.084 kb on + strand, within AMB_RS02435at 505.085 kb on - strand, within AMB_RS02435at 505.085 kb on - strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.183 kb on + strandat 505.183 kb on + strandat 505.183 kb on + strandat 505.184 kb on - strandat 505.184 kb on - strandat 505.184 kb on - strandat 505.254 kb on + strandat 505.254 kb on + strandat 505.291 kb on - strand, within AMB_RS23135at 505.359 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.696 kb on - strand, within AMB_RS23135at 506.034 kb on + strandat 506.035 kb on - strandat 506.143 kb on + strand, within AMB_RS02445at 506.143 kb on + strand, within AMB_RS02445at 506.143 kb on + strand, within AMB_RS02445at 506.144 kb on - strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.248 kb on + strand, within AMB_RS02445at 506.248 kb on + strand, within AMB_RS02445at 506.249 kb on - strand, within AMB_RS02445at 506.288 kb on - strand, within AMB_RS02445at 506.288 kb on - strand, within AMB_RS02445at 506.288 kb on - strand, within AMB_RS02445at 506.509 kb on + strandat 506.509 kb on + strandat 506.509 kb on + strandat 506.510 kb on - strandat 506.622 kb on + strandat 506.682 kb on + strandat 506.787 kb on + strandat 506.787 kb on + strandat 506.787 kb on + strandat 506.788 kb on - strandat 506.788 kb on - strandat 506.788 kb on - strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.794 kb on - strandat 506.794 kb on - strandat 506.794 kb on - strandat 506.794 kb on - strandat 506.934 kb on + strandat 506.934 kb on + strandat 506.934 kb on + strandat 506.934 kb on + strandat 506.935 kb on - strandat 506.935 kb on - strandat 506.935 kb on - strandat 506.935 kb on - strandat 506.972 kb on + strandat 506.973 kb on - strandat 506.994 kb on + strandat 507.013 kb on - strandat 507.105 kb on + strandat 507.105 kb on + strandat 507.126 kb on + strandat 507.126 kb on + strandat 507.126 kb on + strandat 507.126 kb on + strandat 507.126 kb on + strandat 507.127 kb on - strandat 507.127 kb on - strandat 507.127 kb on - strandat 507.127 kb on - strandat 507.171 kb on + strand, within AMB_RS23140at 507.171 kb on + strand, within AMB_RS23140at 507.172 kb on - strand, within AMB_RS23140at 507.172 kb on - strand, within AMB_RS23140at 507.172 kb on - strand, within AMB_RS23140at 507.172 kb on - strand, within AMB_RS23140at 507.172 kb on - strand, within AMB_RS23140at 507.213 kb on + strand, within AMB_RS23140at 507.213 kb on + strand, within AMB_RS23140at 507.215 kb on + strand, within AMB_RS23140at 507.216 kb on - strand, within AMB_RS23140at 507.229 kb on - strand, within AMB_RS23140at 507.229 kb on - strand, within AMB_RS23140at 507.229 kb on - strand, within AMB_RS23140at 507.246 kb on + strand, within AMB_RS23140at 507.247 kb on - strand, within AMB_RS23140at 507.247 kb on - strand, within AMB_RS23140at 507.303 kb on + strand, within AMB_RS23140at 507.304 kb on - strand, within AMB_RS23140at 507.304 kb on - strand, within AMB_RS23140at 507.304 kb on - strand, within AMB_RS23140at 507.438 kb on + strand, within AMB_RS23140at 507.438 kb on + strand, within AMB_RS23140at 507.438 kb on + strand, within AMB_RS23140at 507.439 kb on - strand, within AMB_RS23140at 507.522 kb on + strand, within AMB_RS23140at 507.523 kb on - strand, within AMB_RS23140at 507.523 kb on - strand, within AMB_RS23140at 507.523 kb on - strand, within AMB_RS23140at 507.523 kb on - strand, within AMB_RS23140at 507.523 kb on - strand, within AMB_RS23140

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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505,084 + AMB_RS02435 0.79 -1.3
505,084 + AMB_RS02435 0.79 -1.4
505,085 - AMB_RS02435 0.79 +0.4
505,085 - AMB_RS02435 0.79 +0.4
505,087 + AMB_RS02435 0.79 +0.0
505,087 + AMB_RS02435 0.79 +2.4
505,087 + AMB_RS02435 0.79 +0.4
505,088 - AMB_RS02435 0.79 -0.8
505,088 - AMB_RS02435 0.79 +0.1
505,088 - AMB_RS02435 0.79 -1.6
505,183 + -0.0
505,183 + -0.3
505,183 + +0.4
505,184 - -0.3
505,184 - -0.3
505,184 - -1.6
505,254 + +0.4
505,254 + +0.5
505,291 - AMB_RS23135 0.12 +0.1
505,359 + AMB_RS23135 0.19 -0.3
505,530 + AMB_RS23135 0.38 -0.2
505,530 + AMB_RS23135 0.38 -0.2
505,530 + AMB_RS23135 0.38 +1.0
505,530 + AMB_RS23135 0.38 +0.1
505,530 + AMB_RS23135 0.38 -0.6
505,531 - AMB_RS23135 0.38 -0.4
505,531 - AMB_RS23135 0.38 -0.8
505,531 - AMB_RS23135 0.38 -2.4
505,696 - AMB_RS23135 0.57 -0.4
506,034 + -0.6
506,035 - -0.9
506,143 + AMB_RS02445 0.14 -0.9
506,143 + AMB_RS02445 0.14 -0.7
506,143 + AMB_RS02445 0.14 -0.2
506,144 - AMB_RS02445 0.14 -0.5
506,245 + AMB_RS02445 0.36 -1.8
506,245 + AMB_RS02445 0.36 +0.9
506,245 + AMB_RS02445 0.36 -0.8
506,245 + AMB_RS02445 0.36 -0.4
506,245 + AMB_RS02445 0.36 -1.8
506,246 - AMB_RS02445 0.37 -0.7
506,246 - AMB_RS02445 0.37 -0.8
506,246 - AMB_RS02445 0.37 +0.7
506,246 - AMB_RS02445 0.37 -0.0
506,246 - AMB_RS02445 0.37 -1.7
506,246 - AMB_RS02445 0.37 +0.6
506,248 + AMB_RS02445 0.37 -0.1
506,248 + AMB_RS02445 0.37 -0.9
506,249 - AMB_RS02445 0.37 -1.6
506,288 - AMB_RS02445 0.46 +0.1
506,288 - AMB_RS02445 0.46 -2.1
506,288 - AMB_RS02445 0.46 -0.6
506,509 + +0.3
506,509 + -0.5
506,509 + -0.1
506,510 - +0.2
506,622 + -0.9
506,682 + -0.4
506,787 + -0.6
506,787 + +0.4
506,787 + +0.1
506,788 - -0.1
506,788 - +0.2
506,788 - -0.0
506,793 + +0.0
506,793 + -1.1
506,793 + -0.4
506,793 + +1.1
506,793 + +0.6
506,794 - -0.6
506,794 - -1.4
506,794 - -1.1
506,794 - -0.8
506,934 + -0.1
506,934 + -0.6
506,934 + -0.6
506,934 + +0.1
506,935 - -0.1
506,935 - +1.3
506,935 - -0.3
506,935 - -1.6
506,972 + +0.1
506,973 - +0.4
506,994 + +0.6
507,013 - -0.1
507,105 + +1.2
507,105 + -0.0
507,126 + -0.1
507,126 + -0.4
507,126 + +0.2
507,126 + +0.2
507,126 + +0.7
507,127 - -0.1
507,127 - -0.4
507,127 - -1.0
507,127 - -0.6
507,171 + AMB_RS23140 0.11 -0.2
507,171 + AMB_RS23140 0.11 +0.9
507,172 - AMB_RS23140 0.11 -1.0
507,172 - AMB_RS23140 0.11 -0.2
507,172 - AMB_RS23140 0.11 +0.3
507,172 - AMB_RS23140 0.11 -0.3
507,172 - AMB_RS23140 0.11 -0.3
507,213 + AMB_RS23140 0.13 -0.2
507,213 + AMB_RS23140 0.13 +0.7
507,215 + AMB_RS23140 0.13 -0.1
507,216 - AMB_RS23140 0.13 -0.7
507,229 - AMB_RS23140 0.13 -0.4
507,229 - AMB_RS23140 0.13 +0.4
507,229 - AMB_RS23140 0.13 -0.0
507,246 + AMB_RS23140 0.14 -0.2
507,247 - AMB_RS23140 0.14 +0.0
507,247 - AMB_RS23140 0.14 +0.0
507,303 + AMB_RS23140 0.16 -0.4
507,304 - AMB_RS23140 0.16 -0.0
507,304 - AMB_RS23140 0.16 -0.6
507,304 - AMB_RS23140 0.16 +0.7
507,438 + AMB_RS23140 0.21 +0.3
507,438 + AMB_RS23140 0.21 -0.6
507,438 + AMB_RS23140 0.21 -0.3
507,439 - AMB_RS23140 0.21 -0.7
507,522 + AMB_RS23140 0.24 -0.7
507,523 - AMB_RS23140 0.24 -0.4
507,523 - AMB_RS23140 0.24 +1.0
507,523 - AMB_RS23140 0.24 -1.0
507,523 - AMB_RS23140 0.24 +1.0
507,523 - AMB_RS23140 0.24 -0.7

Or see this region's nucleotide sequence