Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01385

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01375 and AMB_RS01380 are separated by 50 nucleotidesAMB_RS01380 and AMB_RS01385 are separated by 68 nucleotidesAMB_RS01385 and AMB_RS01390 overlap by 11 nucleotides AMB_RS01375: AMB_RS01375 - peptide chain release factor 3, at 302,424 to 304,010 _RS01375 AMB_RS01380: AMB_RS01380 - hypothetical protein, at 304,061 to 304,411 _RS01380 AMB_RS01385: AMB_RS01385 - HAMP domain-containing protein, at 304,480 to 306,093 _RS01385 AMB_RS01390: AMB_RS01390 - DNA-binding response regulator, at 306,083 to 306,778 _RS01390 Position (kb) 304 305 306 307Strain fitness (log2 ratio) -1 0 1at 306.876 kb on - strandat 306.876 kb on - strandat 306.876 kb on - strandat 306.942 kb on + strandat 306.942 kb on + strandat 306.943 kb on - strandat 306.944 kb on + strandat 306.945 kb on - strandat 307.051 kb on + strandat 307.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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306,876 - +0.1
306,876 - -0.7
306,876 - +0.1
306,942 + +0.5
306,942 + +0.5
306,943 - -0.0
306,944 + +0.0
306,945 - +0.1
307,051 + +0.7
307,052 - +0.1

Or see this region's nucleotide sequence