Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00720

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00710 and AMB_RS00715 are separated by 12 nucleotidesAMB_RS00715 and AMB_RS00720 are separated by 144 nucleotidesAMB_RS00720 and AMB_RS00725 overlap by 4 nucleotidesAMB_RS00725 and AMB_RS00730 are separated by 3 nucleotides AMB_RS00710: AMB_RS00710 - cupin domain-containing protein, at 162,000 to 162,479 _RS00710 AMB_RS00715: AMB_RS00715 - glycosyltransferase family 2 protein, at 162,492 to 163,199 _RS00715 AMB_RS00720: AMB_RS00720 - hypothetical protein, at 163,344 to 165,542 _RS00720 AMB_RS00725: AMB_RS00725 - glycosyltransferase family 9 protein, at 165,539 to 166,516 _RS00725 AMB_RS00730: AMB_RS00730 - nucleotide sugar dehydrogenase, at 166,520 to 167,791 _RS00730 Position (kb) 163 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1at 162.344 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.389 kb on + strand, within AMB_RS00710at 162.463 kb on + strandat 162.463 kb on + strandat 162.572 kb on - strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.587 kb on - strand, within AMB_RS00715at 162.605 kb on - strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.713 kb on - strand, within AMB_RS00715at 162.721 kb on + strand, within AMB_RS00715at 162.722 kb on - strand, within AMB_RS00715at 162.804 kb on + strand, within AMB_RS00715at 162.805 kb on - strand, within AMB_RS00715at 162.814 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.905 kb on - strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.967 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.153 kb on + strandat 163.153 kb on + strandat 163.182 kb on - strandat 163.208 kb on + strandat 163.223 kb on + strandat 163.223 kb on + strandat 163.224 kb on - strandat 163.242 kb on + strandat 163.420 kb on + strandat 163.420 kb on + strandat 163.420 kb on + strandat 163.421 kb on - strandat 163.421 kb on - strandat 163.421 kb on - strandat 163.801 kb on + strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.850 kb on - strand, within AMB_RS00720at 163.852 kb on + strand, within AMB_RS00720at 163.852 kb on + strand, within AMB_RS00720at 163.853 kb on - strand, within AMB_RS00720at 163.866 kb on + strand, within AMB_RS00720at 163.960 kb on + strand, within AMB_RS00720at 163.961 kb on - strand, within AMB_RS00720at 164.095 kb on + strand, within AMB_RS00720at 164.150 kb on + strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.160 kb on + strand, within AMB_RS00720at 164.160 kb on + strand, within AMB_RS00720at 164.161 kb on - strand, within AMB_RS00720at 164.185 kb on + strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.284 kb on + strand, within AMB_RS00720at 164.284 kb on + strand, within AMB_RS00720at 164.284 kb on + strand, within AMB_RS00720at 164.285 kb on - strand, within AMB_RS00720at 164.285 kb on - strand, within AMB_RS00720at 164.285 kb on - strand, within AMB_RS00720at 164.285 kb on - strand, within AMB_RS00720at 164.477 kb on - strand, within AMB_RS00720at 164.677 kb on + strand, within AMB_RS00720at 164.677 kb on + strand, within AMB_RS00720at 164.677 kb on + strand, within AMB_RS00720at 164.677 kb on + strand, within AMB_RS00720at 164.700 kb on + strand, within AMB_RS00720at 164.700 kb on + strand, within AMB_RS00720at 164.700 kb on + strand, within AMB_RS00720at 164.700 kb on + strand, within AMB_RS00720at 164.701 kb on - strand, within AMB_RS00720at 164.701 kb on - strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.776 kb on + strand, within AMB_RS00720at 164.777 kb on - strand, within AMB_RS00720at 164.777 kb on - strand, within AMB_RS00720at 164.777 kb on - strand, within AMB_RS00720at 164.777 kb on - strand, within AMB_RS00720at 164.777 kb on - strand, within AMB_RS00720at 164.848 kb on + strand, within AMB_RS00720at 164.848 kb on + strand, within AMB_RS00720at 164.849 kb on - strand, within AMB_RS00720at 164.849 kb on - strand, within AMB_RS00720at 164.941 kb on + strand, within AMB_RS00720at 164.941 kb on + strand, within AMB_RS00720at 164.942 kb on - strand, within AMB_RS00720at 164.995 kb on + strand, within AMB_RS00720at 164.995 kb on + strand, within AMB_RS00720at 164.995 kb on + strand, within AMB_RS00720at 164.996 kb on - strand, within AMB_RS00720at 164.996 kb on - strand, within AMB_RS00720at 164.996 kb on - strand, within AMB_RS00720at 165.035 kb on + strand, within AMB_RS00720at 165.035 kb on + strand, within AMB_RS00720at 165.036 kb on - strand, within AMB_RS00720at 165.036 kb on - strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.037 kb on + strand, within AMB_RS00720at 165.038 kb on - strand, within AMB_RS00720at 165.038 kb on - strand, within AMB_RS00720at 165.038 kb on - strand, within AMB_RS00720at 165.038 kb on - strand, within AMB_RS00720at 165.038 kb on - strand, within AMB_RS00720at 165.038 kb on - strand, within AMB_RS00720at 165.137 kb on - strand, within AMB_RS00720at 165.137 kb on - strand, within AMB_RS00720at 165.137 kb on - strand, within AMB_RS00720at 165.137 kb on - strand, within AMB_RS00720at 165.137 kb on - strand, within AMB_RS00720at 165.137 kb on - strand, within AMB_RS00720at 165.295 kb on + strand, within AMB_RS00720at 165.296 kb on - strand, within AMB_RS00720at 165.325 kb on + strandat 165.325 kb on + strandat 165.325 kb on + strandat 165.325 kb on + strandat 165.325 kb on + strandat 165.326 kb on - strandat 165.326 kb on - strandat 165.326 kb on - strandat 165.329 kb on - strandat 165.373 kb on + strandat 165.373 kb on + strandat 165.374 kb on - strandat 165.397 kb on + strandat 165.397 kb on + strandat 165.398 kb on - strandat 165.398 kb on - strandat 165.398 kb on - strandat 165.398 kb on - strandat 165.488 kb on - strandat 165.488 kb on - strandat 165.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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162,344 + AMB_RS00710 0.72 -0.3
162,344 + AMB_RS00710 0.72 -0.1
162,389 + AMB_RS00710 0.81 +0.2
162,463 + -0.4
162,463 + +0.1
162,572 - AMB_RS00715 0.11 -0.2
162,586 + AMB_RS00715 0.13 +0.3
162,586 + AMB_RS00715 0.13 +0.1
162,587 - AMB_RS00715 0.13 +0.0
162,605 - AMB_RS00715 0.16 -0.1
162,712 + AMB_RS00715 0.31 -0.9
162,712 + AMB_RS00715 0.31 -0.2
162,713 - AMB_RS00715 0.31 -1.0
162,721 + AMB_RS00715 0.32 -0.0
162,722 - AMB_RS00715 0.32 -0.4
162,804 + AMB_RS00715 0.44 -0.9
162,805 - AMB_RS00715 0.44 -1.1
162,814 + AMB_RS00715 0.45 -0.2
162,889 + AMB_RS00715 0.56 -0.8
162,889 + AMB_RS00715 0.56 +0.9
162,890 - AMB_RS00715 0.56 -0.2
162,890 - AMB_RS00715 0.56 -0.2
162,890 - AMB_RS00715 0.56 -1.1
162,904 + AMB_RS00715 0.58 -1.1
162,904 + AMB_RS00715 0.58 -0.3
162,905 - AMB_RS00715 0.58 +0.9
162,966 + AMB_RS00715 0.67 -0.3
162,966 + AMB_RS00715 0.67 +0.5
162,967 - AMB_RS00715 0.67 +0.7
163,013 - AMB_RS00715 0.74 -0.5
163,013 - AMB_RS00715 0.74 -0.2
163,013 - AMB_RS00715 0.74 -2.9
163,153 + -0.2
163,153 + -0.1
163,182 - +0.5
163,208 + -0.8
163,223 + -0.2
163,223 + -0.3
163,224 - -1.3
163,242 + +0.3
163,420 + -0.2
163,420 + -0.2
163,420 + +0.3
163,421 - -0.6
163,421 - -0.1
163,421 - -0.9
163,801 + AMB_RS00720 0.21 -0.1
163,802 - AMB_RS00720 0.21 +0.1
163,802 - AMB_RS00720 0.21 +0.6
163,802 - AMB_RS00720 0.21 +0.1
163,802 - AMB_RS00720 0.21 -0.2
163,805 + AMB_RS00720 0.21 +0.5
163,805 + AMB_RS00720 0.21 -0.0
163,805 + AMB_RS00720 0.21 +0.5
163,805 + AMB_RS00720 0.21 -0.2
163,806 - AMB_RS00720 0.21 -0.3
163,806 - AMB_RS00720 0.21 -0.6
163,806 - AMB_RS00720 0.21 -0.0
163,806 - AMB_RS00720 0.21 -0.1
163,806 - AMB_RS00720 0.21 -0.5
163,850 - AMB_RS00720 0.23 -0.3
163,852 + AMB_RS00720 0.23 +0.3
163,852 + AMB_RS00720 0.23 -1.1
163,853 - AMB_RS00720 0.23 +0.4
163,866 + AMB_RS00720 0.24 -0.2
163,960 + AMB_RS00720 0.28 -0.9
163,961 - AMB_RS00720 0.28 -0.5
164,095 + AMB_RS00720 0.34 +0.2
164,150 + AMB_RS00720 0.37 -0.5
164,153 - AMB_RS00720 0.37 +0.6
164,153 - AMB_RS00720 0.37 +0.3
164,153 - AMB_RS00720 0.37 -0.8
164,153 - AMB_RS00720 0.37 -0.1
164,160 + AMB_RS00720 0.37 -0.2
164,160 + AMB_RS00720 0.37 +1.0
164,161 - AMB_RS00720 0.37 -0.2
164,185 + AMB_RS00720 0.38 -0.5
164,186 - AMB_RS00720 0.38 -1.1
164,186 - AMB_RS00720 0.38 -0.5
164,186 - AMB_RS00720 0.38 +0.4
164,186 - AMB_RS00720 0.38 +0.4
164,284 + AMB_RS00720 0.43 -0.1
164,284 + AMB_RS00720 0.43 +0.4
164,284 + AMB_RS00720 0.43 -0.5
164,285 - AMB_RS00720 0.43 -1.0
164,285 - AMB_RS00720 0.43 -1.1
164,285 - AMB_RS00720 0.43 +0.6
164,285 - AMB_RS00720 0.43 -0.2
164,477 - AMB_RS00720 0.52 -0.2
164,677 + AMB_RS00720 0.61 -0.3
164,677 + AMB_RS00720 0.61 -1.8
164,677 + AMB_RS00720 0.61 -1.5
164,677 + AMB_RS00720 0.61 -0.2
164,700 + AMB_RS00720 0.62 -2.0
164,700 + AMB_RS00720 0.62 +0.9
164,700 + AMB_RS00720 0.62 -2.0
164,700 + AMB_RS00720 0.62 -0.1
164,701 - AMB_RS00720 0.62 +0.2
164,701 - AMB_RS00720 0.62 -0.2
164,776 + AMB_RS00720 0.65 -0.1
164,776 + AMB_RS00720 0.65 +0.5
164,776 + AMB_RS00720 0.65 -0.2
164,776 + AMB_RS00720 0.65 -0.1
164,776 + AMB_RS00720 0.65 -0.2
164,776 + AMB_RS00720 0.65 +0.2
164,776 + AMB_RS00720 0.65 +0.0
164,776 + AMB_RS00720 0.65 +0.7
164,777 - AMB_RS00720 0.65 +0.7
164,777 - AMB_RS00720 0.65 -1.0
164,777 - AMB_RS00720 0.65 -0.3
164,777 - AMB_RS00720 0.65 -0.0
164,777 - AMB_RS00720 0.65 +0.4
164,848 + AMB_RS00720 0.68 -0.5
164,848 + AMB_RS00720 0.68 -0.2
164,849 - AMB_RS00720 0.68 -0.2
164,849 - AMB_RS00720 0.68 +1.2
164,941 + AMB_RS00720 0.73 -0.6
164,941 + AMB_RS00720 0.73 -0.4
164,942 - AMB_RS00720 0.73 +0.7
164,995 + AMB_RS00720 0.75 +0.4
164,995 + AMB_RS00720 0.75 -0.4
164,995 + AMB_RS00720 0.75 -1.1
164,996 - AMB_RS00720 0.75 -0.1
164,996 - AMB_RS00720 0.75 +0.2
164,996 - AMB_RS00720 0.75 -0.3
165,035 + AMB_RS00720 0.77 -0.3
165,035 + AMB_RS00720 0.77 -1.8
165,036 - AMB_RS00720 0.77 +0.0
165,036 - AMB_RS00720 0.77 -1.7
165,037 + AMB_RS00720 0.77 +0.0
165,037 + AMB_RS00720 0.77 +0.8
165,037 + AMB_RS00720 0.77 -1.0
165,037 + AMB_RS00720 0.77 -0.1
165,037 + AMB_RS00720 0.77 -0.5
165,037 + AMB_RS00720 0.77 -0.1
165,037 + AMB_RS00720 0.77 +1.2
165,037 + AMB_RS00720 0.77 +0.0
165,037 + AMB_RS00720 0.77 -0.6
165,038 - AMB_RS00720 0.77 +0.5
165,038 - AMB_RS00720 0.77 +0.9
165,038 - AMB_RS00720 0.77 -0.1
165,038 - AMB_RS00720 0.77 -0.4
165,038 - AMB_RS00720 0.77 +0.6
165,038 - AMB_RS00720 0.77 -2.1
165,137 - AMB_RS00720 0.82 -0.2
165,137 - AMB_RS00720 0.82 +0.1
165,137 - AMB_RS00720 0.82 -0.1
165,137 - AMB_RS00720 0.82 -1.0
165,137 - AMB_RS00720 0.82 +0.6
165,137 - AMB_RS00720 0.82 -0.1
165,295 + AMB_RS00720 0.89 -0.3
165,296 - AMB_RS00720 0.89 +0.7
165,325 + -0.2
165,325 + +0.3
165,325 + +0.2
165,325 + -0.3
165,325 + -0.5
165,326 - +0.9
165,326 - +0.4
165,326 - -0.5
165,329 - +1.6
165,373 + -0.4
165,373 + -1.0
165,374 - +0.6
165,397 + -0.2
165,397 + +0.0
165,398 - -0.4
165,398 - +0.0
165,398 - +0.5
165,398 - -0.6
165,488 - -0.6
165,488 - +0.5
165,543 - +0.3

Or see this region's nucleotide sequence