Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00025

Experiment: without_iron3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00015 and AMB_RS00020 overlap by 20 nucleotidesAMB_RS00020 and AMB_RS00025 are separated by 2 nucleotidesAMB_RS00025 and AMB_RS00030 are separated by 99 nucleotidesAMB_RS00030 and AMB_RS00035 are separated by 0 nucleotides AMB_RS00015: AMB_RS00015 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 3,305 to 3,937 _RS00015 AMB_RS00020: AMB_RS00020 - ParA family protein, at 3,918 to 4,715 _RS00020 AMB_RS00025: AMB_RS00025 - chromosome partitioning protein ParB, at 4,718 to 5,662 _RS00025 AMB_RS00030: AMB_RS00030 - hypothetical protein, at 5,762 to 6,118 _RS00030 AMB_RS00035: AMB_RS00035 - hypothetical protein, at 6,119 to 6,610 _RS00035 Position (kb) 4 5 6Strain fitness (log2 ratio) -1 0 1at 3.847 kb on + strand, within AMB_RS00015at 3.847 kb on + strand, within AMB_RS00015at 5.623 kb on + strandat 5.682 kb on + strandat 5.705 kb on + strandat 5.706 kb on - strandat 6.066 kb on - strand, within AMB_RS00030at 6.152 kb on + strandat 6.152 kb on + strandat 6.228 kb on - strand, within AMB_RS00035at 6.257 kb on + strand, within AMB_RS00035at 6.485 kb on + strand, within AMB_RS00035at 6.486 kb on - strand, within AMB_RS00035at 6.486 kb on - strand, within AMB_RS00035at 6.488 kb on + strand, within AMB_RS00035at 6.488 kb on + strand, within AMB_RS00035at 6.489 kb on - strand, within AMB_RS00035at 6.489 kb on - strand, within AMB_RS00035at 6.489 kb on - strand, within AMB_RS00035at 6.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron3
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3,847 + AMB_RS00015 0.86 -0.8
3,847 + AMB_RS00015 0.86 +1.0
5,623 + -0.8
5,682 + -1.2
5,705 + -1.0
5,706 - +0.7
6,066 - AMB_RS00030 0.85 +1.1
6,152 + -0.2
6,152 + -0.7
6,228 - AMB_RS00035 0.22 -0.7
6,257 + AMB_RS00035 0.28 -0.2
6,485 + AMB_RS00035 0.74 +0.5
6,486 - AMB_RS00035 0.75 +0.1
6,486 - AMB_RS00035 0.75 -0.0
6,488 + AMB_RS00035 0.75 -0.8
6,488 + AMB_RS00035 0.75 -0.0
6,489 - AMB_RS00035 0.75 -0.4
6,489 - AMB_RS00035 0.75 -0.6
6,489 - AMB_RS00035 0.75 -0.7
6,629 - +1.1

Or see this region's nucleotide sequence