Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20220

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20215 and ABIE41_RS20220 are separated by 179 nucleotidesABIE41_RS20220 and ABIE41_RS20225 overlap by 4 nucleotidesABIE41_RS20225 and ABIE41_RS20230 are separated by 26 nucleotides ABIE41_RS20215: ABIE41_RS20215 - GntR family transcriptional regulator, at 4,154,900 to 4,155,568 _RS20215 ABIE41_RS20220: ABIE41_RS20220 - amidohydrolase family protein, at 4,155,748 to 4,156,803 _RS20220 ABIE41_RS20225: ABIE41_RS20225 - VOC family protein, at 4,156,800 to 4,157,717 _RS20225 ABIE41_RS20230: ABIE41_RS20230 - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 4,157,744 to 4,159,381 _RS20230 Position (kb) 4155 4156 4157Strain fitness (log2 ratio) -2 -1 0 1 2at 4155.004 kb on + strand, within ABIE41_RS20215at 4155.004 kb on + strand, within ABIE41_RS20215at 4155.005 kb on - strand, within ABIE41_RS20215at 4155.072 kb on + strand, within ABIE41_RS20215at 4155.073 kb on - strand, within ABIE41_RS20215at 4155.073 kb on - strand, within ABIE41_RS20215at 4155.104 kb on + strand, within ABIE41_RS20215at 4155.105 kb on - strand, within ABIE41_RS20215at 4155.197 kb on - strand, within ABIE41_RS20215at 4155.287 kb on + strand, within ABIE41_RS20215at 4155.447 kb on + strand, within ABIE41_RS20215at 4155.447 kb on + strand, within ABIE41_RS20215at 4155.448 kb on - strand, within ABIE41_RS20215at 4155.529 kb on - strandat 4155.529 kb on - strandat 4155.734 kb on - strandat 4155.844 kb on + strandat 4155.844 kb on + strandat 4155.845 kb on - strandat 4155.931 kb on + strand, within ABIE41_RS20220at 4155.931 kb on + strand, within ABIE41_RS20220at 4155.932 kb on - strand, within ABIE41_RS20220at 4155.932 kb on - strand, within ABIE41_RS20220at 4155.932 kb on - strand, within ABIE41_RS20220at 4155.932 kb on - strand, within ABIE41_RS20220at 4155.932 kb on - strand, within ABIE41_RS20220at 4155.937 kb on - strand, within ABIE41_RS20220at 4156.040 kb on - strand, within ABIE41_RS20220at 4156.040 kb on - strand, within ABIE41_RS20220at 4156.078 kb on + strand, within ABIE41_RS20220at 4156.078 kb on + strand, within ABIE41_RS20220at 4156.080 kb on + strand, within ABIE41_RS20220at 4156.080 kb on + strand, within ABIE41_RS20220at 4156.080 kb on + strand, within ABIE41_RS20220at 4156.080 kb on + strand, within ABIE41_RS20220at 4156.080 kb on + strand, within ABIE41_RS20220at 4156.080 kb on + strand, within ABIE41_RS20220at 4156.081 kb on - strand, within ABIE41_RS20220at 4156.081 kb on - strand, within ABIE41_RS20220at 4156.081 kb on - strand, within ABIE41_RS20220at 4156.081 kb on - strand, within ABIE41_RS20220at 4156.081 kb on - strand, within ABIE41_RS20220at 4156.382 kb on - strand, within ABIE41_RS20220at 4156.669 kb on + strand, within ABIE41_RS20220at 4156.670 kb on - strand, within ABIE41_RS20220at 4156.875 kb on + strandat 4156.875 kb on + strandat 4156.875 kb on + strandat 4156.875 kb on + strandat 4156.876 kb on - strandat 4156.876 kb on - strandat 4156.876 kb on - strandat 4156.877 kb on + strandat 4156.878 kb on - strandat 4156.878 kb on - strandat 4156.878 kb on - strandat 4157.038 kb on + strand, within ABIE41_RS20225at 4157.038 kb on + strand, within ABIE41_RS20225at 4157.114 kb on - strand, within ABIE41_RS20225at 4157.148 kb on + strand, within ABIE41_RS20225at 4157.149 kb on - strand, within ABIE41_RS20225at 4157.505 kb on + strand, within ABIE41_RS20225at 4157.680 kb on + strandat 4157.680 kb on + strandat 4157.680 kb on + strandat 4157.680 kb on + strandat 4157.680 kb on + strandat 4157.680 kb on + strandat 4157.680 kb on + strandat 4157.681 kb on - strandat 4157.681 kb on - strandat 4157.681 kb on - strandat 4157.681 kb on - strandat 4157.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,155,004 + ABIE41_RS20215 0.16 -0.6
4,155,004 + ABIE41_RS20215 0.16 +0.4
4,155,005 - ABIE41_RS20215 0.16 +0.7
4,155,072 + ABIE41_RS20215 0.26 -0.3
4,155,073 - ABIE41_RS20215 0.26 +0.1
4,155,073 - ABIE41_RS20215 0.26 -0.3
4,155,104 + ABIE41_RS20215 0.30 +1.0
4,155,105 - ABIE41_RS20215 0.31 +0.1
4,155,197 - ABIE41_RS20215 0.44 -0.6
4,155,287 + ABIE41_RS20215 0.58 -0.9
4,155,447 + ABIE41_RS20215 0.82 +0.2
4,155,447 + ABIE41_RS20215 0.82 +0.4
4,155,448 - ABIE41_RS20215 0.82 +0.0
4,155,529 - -0.6
4,155,529 - +0.3
4,155,734 - -0.7
4,155,844 + +0.8
4,155,844 + -0.7
4,155,845 - +0.4
4,155,931 + ABIE41_RS20220 0.17 +0.3
4,155,931 + ABIE41_RS20220 0.17 +1.4
4,155,932 - ABIE41_RS20220 0.17 -0.4
4,155,932 - ABIE41_RS20220 0.17 +0.0
4,155,932 - ABIE41_RS20220 0.17 +0.0
4,155,932 - ABIE41_RS20220 0.17 +0.7
4,155,932 - ABIE41_RS20220 0.17 +0.2
4,155,937 - ABIE41_RS20220 0.18 -1.1
4,156,040 - ABIE41_RS20220 0.28 -0.2
4,156,040 - ABIE41_RS20220 0.28 -0.6
4,156,078 + ABIE41_RS20220 0.31 +0.7
4,156,078 + ABIE41_RS20220 0.31 +0.2
4,156,080 + ABIE41_RS20220 0.31 +0.7
4,156,080 + ABIE41_RS20220 0.31 +0.2
4,156,080 + ABIE41_RS20220 0.31 +0.6
4,156,080 + ABIE41_RS20220 0.31 -1.0
4,156,080 + ABIE41_RS20220 0.31 +0.0
4,156,080 + ABIE41_RS20220 0.31 -0.0
4,156,081 - ABIE41_RS20220 0.32 +0.4
4,156,081 - ABIE41_RS20220 0.32 -0.9
4,156,081 - ABIE41_RS20220 0.32 +0.5
4,156,081 - ABIE41_RS20220 0.32 -1.4
4,156,081 - ABIE41_RS20220 0.32 +0.5
4,156,382 - ABIE41_RS20220 0.60 +0.8
4,156,669 + ABIE41_RS20220 0.87 +0.4
4,156,670 - ABIE41_RS20220 0.87 +0.7
4,156,875 + +0.7
4,156,875 + +0.8
4,156,875 + +1.0
4,156,875 + -1.1
4,156,876 - -0.1
4,156,876 - -1.5
4,156,876 - +0.4
4,156,877 + +0.8
4,156,878 - -0.6
4,156,878 - +2.5
4,156,878 - -0.1
4,157,038 + ABIE41_RS20225 0.26 +1.4
4,157,038 + ABIE41_RS20225 0.26 -0.1
4,157,114 - ABIE41_RS20225 0.34 -0.1
4,157,148 + ABIE41_RS20225 0.38 -0.9
4,157,149 - ABIE41_RS20225 0.38 +1.1
4,157,505 + ABIE41_RS20225 0.77 +0.8
4,157,680 + -0.3
4,157,680 + +0.4
4,157,680 + -1.9
4,157,680 + -0.1
4,157,680 + +0.3
4,157,680 + +0.1
4,157,680 + +1.1
4,157,681 - -2.1
4,157,681 - +1.1
4,157,681 - -1.3
4,157,681 - +0.2
4,157,683 - +2.4

Or see this region's nucleotide sequence