Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01580 and ABIE41_RS01585 are separated by 123 nucleotides ABIE41_RS01585 and ABIE41_RS01590 overlap by 7 nucleotides
ABIE41_RS01580: ABIE41_RS01580 - polyamine ABC transporter substrate-binding protein, at 314,807 to 315,844
_RS01580
ABIE41_RS01585: ABIE41_RS01585 - LysR substrate-binding domain-containing protein, at 315,968 to 316,885
_RS01585
ABIE41_RS01590: ABIE41_RS01590 - efflux transporter outer membrane subunit, at 316,879 to 318,402
_RS01590
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1
2 at 314.989 kb on + strand, within ABIE41_RS01580 at 315.222 kb on + strand, within ABIE41_RS01580 at 315.222 kb on + strand, within ABIE41_RS01580 at 315.223 kb on - strand, within ABIE41_RS01580 at 315.223 kb on - strand, within ABIE41_RS01580 at 315.333 kb on + strand, within ABIE41_RS01580 at 315.333 kb on + strand, within ABIE41_RS01580 at 315.334 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.373 kb on - strand, within ABIE41_RS01580 at 315.445 kb on - strand, within ABIE41_RS01580 at 315.445 kb on - strand, within ABIE41_RS01580 at 315.522 kb on + strand, within ABIE41_RS01580 at 315.605 kb on + strand, within ABIE41_RS01580 at 315.665 kb on + strand, within ABIE41_RS01580 at 315.666 kb on - strand, within ABIE41_RS01580 at 315.669 kb on + strand, within ABIE41_RS01580 at 315.669 kb on + strand, within ABIE41_RS01580 at 315.670 kb on - strand, within ABIE41_RS01580 at 315.670 kb on - strand, within ABIE41_RS01580 at 315.670 kb on - strand, within ABIE41_RS01580 at 315.748 kb on - strand at 315.748 kb on - strand at 315.940 kb on + strand at 315.940 kb on + strand at 315.941 kb on - strand at 316.005 kb on + strand at 316.005 kb on + strand at 316.005 kb on + strand at 316.005 kb on + strand at 316.005 kb on + strand at 316.005 kb on + strand at 316.045 kb on - strand at 316.048 kb on + strand at 316.048 kb on + strand at 316.049 kb on - strand at 316.049 kb on - strand at 316.091 kb on + strand, within ABIE41_RS01585 at 316.091 kb on + strand, within ABIE41_RS01585 at 316.091 kb on + strand, within ABIE41_RS01585 at 316.091 kb on + strand, within ABIE41_RS01585 at 316.091 kb on + strand, within ABIE41_RS01585 at 316.092 kb on - strand, within ABIE41_RS01585 at 316.092 kb on - strand, within ABIE41_RS01585 at 316.092 kb on - strand, within ABIE41_RS01585 at 316.092 kb on - strand, within ABIE41_RS01585 at 316.092 kb on - strand, within ABIE41_RS01585 at 316.092 kb on - strand, within ABIE41_RS01585 at 316.162 kb on - strand, within ABIE41_RS01585 at 316.163 kb on + strand, within ABIE41_RS01585 at 316.164 kb on - strand, within ABIE41_RS01585 at 316.273 kb on + strand, within ABIE41_RS01585 at 316.274 kb on - strand, within ABIE41_RS01585 at 316.307 kb on + strand, within ABIE41_RS01585 at 316.307 kb on + strand, within ABIE41_RS01585 at 316.307 kb on + strand, within ABIE41_RS01585 at 316.308 kb on - strand, within ABIE41_RS01585 at 316.344 kb on - strand, within ABIE41_RS01585 at 316.344 kb on - strand, within ABIE41_RS01585 at 316.413 kb on - strand, within ABIE41_RS01585 at 316.433 kb on - strand, within ABIE41_RS01585 at 316.433 kb on - strand, within ABIE41_RS01585 at 316.433 kb on - strand, within ABIE41_RS01585 at 316.433 kb on - strand, within ABIE41_RS01585 at 316.697 kb on + strand, within ABIE41_RS01585 at 316.760 kb on + strand, within ABIE41_RS01585 at 316.760 kb on + strand, within ABIE41_RS01585 at 316.760 kb on + strand, within ABIE41_RS01585 at 316.760 kb on + strand, within ABIE41_RS01585 at 316.760 kb on + strand, within ABIE41_RS01585 at 316.883 kb on + strand at 317.039 kb on + strand, within ABIE41_RS01590 at 317.040 kb on - strand, within ABIE41_RS01590 at 317.093 kb on + strand, within ABIE41_RS01590 at 317.093 kb on + strand, within ABIE41_RS01590 at 317.093 kb on + strand, within ABIE41_RS01590 at 317.093 kb on + strand, within ABIE41_RS01590 at 317.094 kb on - strand, within ABIE41_RS01590 at 317.094 kb on - strand, within ABIE41_RS01590 at 317.604 kb on + strand, within ABIE41_RS01590 at 317.630 kb on + strand, within ABIE41_RS01590 at 317.630 kb on + strand, within ABIE41_RS01590 at 317.631 kb on - strand, within ABIE41_RS01590 at 317.631 kb on - strand, within ABIE41_RS01590 at 317.631 kb on - strand, within ABIE41_RS01590 at 317.631 kb on - strand, within ABIE41_RS01590 at 317.631 kb on - strand, within ABIE41_RS01590 at 317.816 kb on + strand, within ABIE41_RS01590 at 317.816 kb on + strand, within ABIE41_RS01590 at 317.816 kb on + strand, within ABIE41_RS01590 at 317.816 kb on + strand, within ABIE41_RS01590 at 317.816 kb on + strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590 at 317.817 kb on - strand, within ABIE41_RS01590
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 314,989 + ABIE41_RS01580 0.18 -0.4 315,222 + ABIE41_RS01580 0.40 -0.6 315,222 + ABIE41_RS01580 0.40 +0.6 315,223 - ABIE41_RS01580 0.40 +0.3 315,223 - ABIE41_RS01580 0.40 +1.9 315,333 + ABIE41_RS01580 0.51 -2.2 315,333 + ABIE41_RS01580 0.51 -0.4 315,334 - ABIE41_RS01580 0.51 +0.4 315,373 - ABIE41_RS01580 0.55 +0.4 315,373 - ABIE41_RS01580 0.55 +0.0 315,373 - ABIE41_RS01580 0.55 -0.1 315,373 - ABIE41_RS01580 0.55 +0.2 315,445 - ABIE41_RS01580 0.61 +0.0 315,445 - ABIE41_RS01580 0.61 -0.9 315,522 + ABIE41_RS01580 0.69 +0.5 315,605 + ABIE41_RS01580 0.77 -1.4 315,665 + ABIE41_RS01580 0.83 -1.4 315,666 - ABIE41_RS01580 0.83 -0.3 315,669 + ABIE41_RS01580 0.83 -0.5 315,669 + ABIE41_RS01580 0.83 +0.1 315,670 - ABIE41_RS01580 0.83 -0.3 315,670 - ABIE41_RS01580 0.83 -0.8 315,670 - ABIE41_RS01580 0.83 -0.1 315,748 - +0.6 315,748 - -2.3 315,940 + +0.4 315,940 + -0.3 315,941 - +0.1 316,005 + -0.1 316,005 + +0.2 316,005 + +0.0 316,005 + -0.1 316,005 + +0.1 316,005 + +0.6 316,045 - -0.6 316,048 + +0.8 316,048 + -0.3 316,049 - -1.5 316,049 - +0.2 316,091 + ABIE41_RS01585 0.13 +0.7 316,091 + ABIE41_RS01585 0.13 -1.1 316,091 + ABIE41_RS01585 0.13 -1.7 316,091 + ABIE41_RS01585 0.13 +0.4 316,091 + ABIE41_RS01585 0.13 -0.7 316,092 - ABIE41_RS01585 0.14 -0.1 316,092 - ABIE41_RS01585 0.14 +0.4 316,092 - ABIE41_RS01585 0.14 -0.5 316,092 - ABIE41_RS01585 0.14 -0.5 316,092 - ABIE41_RS01585 0.14 -1.5 316,092 - ABIE41_RS01585 0.14 -0.0 316,162 - ABIE41_RS01585 0.21 -0.6 316,163 + ABIE41_RS01585 0.21 -0.0 316,164 - ABIE41_RS01585 0.21 +0.0 316,273 + ABIE41_RS01585 0.33 +0.1 316,274 - ABIE41_RS01585 0.33 +0.3 316,307 + ABIE41_RS01585 0.37 -0.4 316,307 + ABIE41_RS01585 0.37 +2.1 316,307 + ABIE41_RS01585 0.37 -0.1 316,308 - ABIE41_RS01585 0.37 -0.3 316,344 - ABIE41_RS01585 0.41 +0.2 316,344 - ABIE41_RS01585 0.41 -1.5 316,413 - ABIE41_RS01585 0.48 -0.0 316,433 - ABIE41_RS01585 0.51 -0.8 316,433 - ABIE41_RS01585 0.51 +0.4 316,433 - ABIE41_RS01585 0.51 -1.0 316,433 - ABIE41_RS01585 0.51 -0.0 316,697 + ABIE41_RS01585 0.79 +0.3 316,760 + ABIE41_RS01585 0.86 +0.2 316,760 + ABIE41_RS01585 0.86 +0.3 316,760 + ABIE41_RS01585 0.86 -0.3 316,760 + ABIE41_RS01585 0.86 +0.0 316,760 + ABIE41_RS01585 0.86 +0.1 316,883 + -0.7 317,039 + ABIE41_RS01590 0.10 -0.4 317,040 - ABIE41_RS01590 0.11 +0.3 317,093 + ABIE41_RS01590 0.14 -0.5 317,093 + ABIE41_RS01590 0.14 +0.1 317,093 + ABIE41_RS01590 0.14 +1.3 317,093 + ABIE41_RS01590 0.14 -0.1 317,094 - ABIE41_RS01590 0.14 +0.1 317,094 - ABIE41_RS01590 0.14 +0.5 317,604 + ABIE41_RS01590 0.48 +1.3 317,630 + ABIE41_RS01590 0.49 +0.1 317,630 + ABIE41_RS01590 0.49 -0.0 317,631 - ABIE41_RS01590 0.49 -0.4 317,631 - ABIE41_RS01590 0.49 +2.1 317,631 - ABIE41_RS01590 0.49 -0.2 317,631 - ABIE41_RS01590 0.49 -2.0 317,631 - ABIE41_RS01590 0.49 -2.2 317,816 + ABIE41_RS01590 0.61 -0.4 317,816 + ABIE41_RS01590 0.61 +2.6 317,816 + ABIE41_RS01590 0.61 -2.3 317,816 + ABIE41_RS01590 0.61 -2.0 317,816 + ABIE41_RS01590 0.61 -1.2 317,817 - ABIE41_RS01590 0.62 -0.2 317,817 - ABIE41_RS01590 0.62 -0.3 317,817 - ABIE41_RS01590 0.62 +0.2 317,817 - ABIE41_RS01590 0.62 +0.8 317,817 - ABIE41_RS01590 0.62 -0.1 317,817 - ABIE41_RS01590 0.62 +2.3 317,817 - ABIE41_RS01590 0.62 +1.4 317,817 - ABIE41_RS01590 0.62 -1.7 317,817 - ABIE41_RS01590 0.62 +0.6 317,817 - ABIE41_RS01590 0.62 -1.5 317,817 - ABIE41_RS01590 0.62 +0.3
Or see this region's nucleotide sequence