Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27085

Experiment: L-Citrulline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS27080 and ABIE40_RS27085 are separated by 708 nucleotidesABIE40_RS27085 and ABIE40_RS27090 are separated by 304 nucleotides ABIE40_RS27080: ABIE40_RS27080 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 133,536 to 134,351 _RS27080 ABIE40_RS27085: ABIE40_RS27085 - Fic family protein, at 135,060 to 136,604 _RS27085 ABIE40_RS27090: ABIE40_RS27090 - IS3 family transposase, at 136,909 to 138,098 _RS27090 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.088 kb on + strand, within ABIE40_RS27080at 134.107 kb on + strand, within ABIE40_RS27080at 134.108 kb on - strand, within ABIE40_RS27080at 134.146 kb on + strand, within ABIE40_RS27080at 134.147 kb on + strand, within ABIE40_RS27080at 134.148 kb on - strand, within ABIE40_RS27080at 134.148 kb on - strand, within ABIE40_RS27080at 134.175 kb on + strand, within ABIE40_RS27080at 134.344 kb on + strandat 134.344 kb on + strandat 134.345 kb on - strandat 134.355 kb on - strandat 134.355 kb on - strandat 134.355 kb on - strandat 134.355 kb on - strandat 134.402 kb on + strandat 134.475 kb on + strandat 134.492 kb on + strandat 134.492 kb on + strandat 134.502 kb on + strandat 134.571 kb on + strandat 134.572 kb on - strandat 134.572 kb on - strandat 134.601 kb on - strandat 134.655 kb on + strandat 134.779 kb on + strandat 134.817 kb on - strandat 134.854 kb on + strandat 134.855 kb on - strandat 134.883 kb on + strandat 134.883 kb on + strandat 134.884 kb on - strandat 134.951 kb on + strandat 134.951 kb on + strandat 134.961 kb on + strandat 135.027 kb on + strandat 135.028 kb on - strandat 135.059 kb on + strandat 135.059 kb on + strandat 135.059 kb on + strandat 135.059 kb on + strandat 135.060 kb on - strandat 135.163 kb on + strandat 135.163 kb on + strandat 135.163 kb on + strandat 135.164 kb on - strandat 135.170 kb on - strandat 135.300 kb on + strand, within ABIE40_RS27085at 135.300 kb on + strand, within ABIE40_RS27085at 135.300 kb on + strand, within ABIE40_RS27085at 135.301 kb on - strand, within ABIE40_RS27085at 135.301 kb on - strand, within ABIE40_RS27085at 135.325 kb on + strand, within ABIE40_RS27085at 135.325 kb on + strand, within ABIE40_RS27085at 135.326 kb on - strand, within ABIE40_RS27085at 135.326 kb on - strand, within ABIE40_RS27085at 135.421 kb on - strand, within ABIE40_RS27085at 135.504 kb on + strand, within ABIE40_RS27085at 135.505 kb on - strand, within ABIE40_RS27085at 135.505 kb on - strand, within ABIE40_RS27085at 135.505 kb on - strand, within ABIE40_RS27085at 135.728 kb on + strand, within ABIE40_RS27085at 135.729 kb on - strand, within ABIE40_RS27085at 136.063 kb on - strand, within ABIE40_RS27085at 136.074 kb on + strand, within ABIE40_RS27085at 136.074 kb on + strand, within ABIE40_RS27085at 136.074 kb on + strand, within ABIE40_RS27085at 136.074 kb on + strand, within ABIE40_RS27085at 136.075 kb on - strand, within ABIE40_RS27085at 136.075 kb on - strand, within ABIE40_RS27085at 136.137 kb on + strand, within ABIE40_RS27085at 136.137 kb on + strand, within ABIE40_RS27085at 136.137 kb on + strand, within ABIE40_RS27085at 136.137 kb on + strand, within ABIE40_RS27085at 136.138 kb on - strand, within ABIE40_RS27085at 136.138 kb on - strand, within ABIE40_RS27085at 136.138 kb on - strand, within ABIE40_RS27085at 136.138 kb on - strand, within ABIE40_RS27085at 136.138 kb on - strand, within ABIE40_RS27085at 136.140 kb on - strand, within ABIE40_RS27085at 136.190 kb on - strand, within ABIE40_RS27085at 136.197 kb on + strand, within ABIE40_RS27085at 136.197 kb on + strand, within ABIE40_RS27085at 136.198 kb on - strand, within ABIE40_RS27085at 136.198 kb on - strand, within ABIE40_RS27085at 136.199 kb on + strand, within ABIE40_RS27085at 136.199 kb on + strand, within ABIE40_RS27085at 136.200 kb on - strand, within ABIE40_RS27085at 136.200 kb on - strand, within ABIE40_RS27085at 136.239 kb on + strand, within ABIE40_RS27085at 136.240 kb on - strand, within ABIE40_RS27085at 136.240 kb on - strand, within ABIE40_RS27085at 136.309 kb on - strand, within ABIE40_RS27085at 136.351 kb on + strand, within ABIE40_RS27085at 136.352 kb on - strand, within ABIE40_RS27085at 136.449 kb on - strand, within ABIE40_RS27085at 136.573 kb on - strandat 136.707 kb on - strandat 136.771 kb on + strandat 136.778 kb on - strandat 136.812 kb on + strandat 136.813 kb on - strandat 136.813 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
remove
134,088 + ABIE40_RS27080 0.68 +0.4
134,107 + ABIE40_RS27080 0.70 +0.1
134,108 - ABIE40_RS27080 0.70 +2.5
134,146 + ABIE40_RS27080 0.75 -0.9
134,147 + ABIE40_RS27080 0.75 +1.2
134,148 - ABIE40_RS27080 0.75 -0.8
134,148 - ABIE40_RS27080 0.75 +1.1
134,175 + ABIE40_RS27080 0.78 +0.0
134,344 + +1.0
134,344 + -1.1
134,345 - -1.6
134,355 - +0.5
134,355 - +0.4
134,355 - -1.1
134,355 - +1.1
134,402 + -1.1
134,475 + +0.1
134,492 + +0.0
134,492 + -0.6
134,502 + +1.5
134,571 + +0.0
134,572 - +0.2
134,572 - +0.9
134,601 - -0.3
134,655 + -0.3
134,779 + -0.3
134,817 - -0.3
134,854 + -0.5
134,855 - -0.9
134,883 + -0.8
134,883 + +0.8
134,884 - +0.2
134,951 + +0.3
134,951 + -1.4
134,961 + -0.7
135,027 + -1.1
135,028 - +0.6
135,059 + -3.6
135,059 + +0.4
135,059 + -1.0
135,059 + +0.8
135,060 - -1.4
135,163 + +0.7
135,163 + +2.4
135,163 + +0.2
135,164 - -0.5
135,170 - -0.4
135,300 + ABIE40_RS27085 0.16 +1.5
135,300 + ABIE40_RS27085 0.16 +0.3
135,300 + ABIE40_RS27085 0.16 +0.6
135,301 - ABIE40_RS27085 0.16 +0.3
135,301 - ABIE40_RS27085 0.16 -1.5
135,325 + ABIE40_RS27085 0.17 -2.4
135,325 + ABIE40_RS27085 0.17 +0.6
135,326 - ABIE40_RS27085 0.17 +0.3
135,326 - ABIE40_RS27085 0.17 +0.3
135,421 - ABIE40_RS27085 0.23 -0.1
135,504 + ABIE40_RS27085 0.29 -0.8
135,505 - ABIE40_RS27085 0.29 +0.3
135,505 - ABIE40_RS27085 0.29 -0.6
135,505 - ABIE40_RS27085 0.29 +0.0
135,728 + ABIE40_RS27085 0.43 +0.7
135,729 - ABIE40_RS27085 0.43 -0.2
136,063 - ABIE40_RS27085 0.65 +0.2
136,074 + ABIE40_RS27085 0.66 +0.1
136,074 + ABIE40_RS27085 0.66 +0.0
136,074 + ABIE40_RS27085 0.66 +0.6
136,074 + ABIE40_RS27085 0.66 +0.6
136,075 - ABIE40_RS27085 0.66 -0.9
136,075 - ABIE40_RS27085 0.66 +0.3
136,137 + ABIE40_RS27085 0.70 -0.0
136,137 + ABIE40_RS27085 0.70 +0.2
136,137 + ABIE40_RS27085 0.70 -0.7
136,137 + ABIE40_RS27085 0.70 +0.4
136,138 - ABIE40_RS27085 0.70 -0.6
136,138 - ABIE40_RS27085 0.70 +0.8
136,138 - ABIE40_RS27085 0.70 +1.2
136,138 - ABIE40_RS27085 0.70 -1.0
136,138 - ABIE40_RS27085 0.70 +0.3
136,140 - ABIE40_RS27085 0.70 -0.3
136,190 - ABIE40_RS27085 0.73 -1.2
136,197 + ABIE40_RS27085 0.74 -0.2
136,197 + ABIE40_RS27085 0.74 +0.5
136,198 - ABIE40_RS27085 0.74 +0.1
136,198 - ABIE40_RS27085 0.74 -0.9
136,199 + ABIE40_RS27085 0.74 -0.7
136,199 + ABIE40_RS27085 0.74 +0.9
136,200 - ABIE40_RS27085 0.74 +0.7
136,200 - ABIE40_RS27085 0.74 -0.3
136,239 + ABIE40_RS27085 0.76 -1.5
136,240 - ABIE40_RS27085 0.76 -0.0
136,240 - ABIE40_RS27085 0.76 -0.6
136,309 - ABIE40_RS27085 0.81 -0.0
136,351 + ABIE40_RS27085 0.84 -1.5
136,352 - ABIE40_RS27085 0.84 -0.4
136,449 - ABIE40_RS27085 0.90 +0.2
136,573 - +0.3
136,707 - +0.7
136,771 + -1.1
136,778 - +0.1
136,812 + +1.9
136,813 - +0.6
136,813 - +0.6

Or see this region's nucleotide sequence