Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20865

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20855 and ABIE40_RS20860 overlap by 29 nucleotidesABIE40_RS20860 and ABIE40_RS20865 overlap by 1 nucleotidesABIE40_RS20865 and ABIE40_RS20870 are separated by 3 nucleotidesABIE40_RS20870 and ABIE40_RS20875 overlap by 1 nucleotides ABIE40_RS20855: ABIE40_RS20855 - hypothetical protein, at 285,483 to 285,851 _RS20855 ABIE40_RS20860: ABIE40_RS20860 - ubiquinol oxidase subunit II, at 285,823 to 286,521 _RS20860 ABIE40_RS20865: ABIE40_RS20865 - cytochrome o ubiquinol oxidase subunit I, at 286,521 to 288,497 _RS20865 ABIE40_RS20870: ABIE40_RS20870 - cytochrome o ubiquinol oxidase subunit III, at 288,501 to 289,127 _RS20870 ABIE40_RS20875: ABIE40_RS20875 - cytochrome o ubiquinol oxidase subunit IV, at 289,127 to 289,486 _RS20875 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -2 -1 0 1 2at 285.822 kb on + strandat 285.822 kb on + strandat 285.823 kb on - strandat 285.823 kb on - strandat 285.823 kb on - strandat 285.940 kb on + strand, within ABIE40_RS20860at 285.940 kb on + strand, within ABIE40_RS20860at 285.940 kb on + strand, within ABIE40_RS20860at 285.941 kb on - strand, within ABIE40_RS20860at 285.941 kb on - strand, within ABIE40_RS20860at 286.015 kb on + strand, within ABIE40_RS20860at 286.015 kb on + strand, within ABIE40_RS20860at 286.016 kb on - strand, within ABIE40_RS20860at 286.016 kb on - strand, within ABIE40_RS20860at 286.024 kb on + strand, within ABIE40_RS20860at 286.141 kb on + strand, within ABIE40_RS20860at 286.142 kb on - strand, within ABIE40_RS20860at 286.142 kb on - strand, within ABIE40_RS20860at 286.142 kb on - strand, within ABIE40_RS20860at 286.142 kb on - strand, within ABIE40_RS20860at 286.198 kb on + strand, within ABIE40_RS20860at 286.198 kb on + strand, within ABIE40_RS20860at 286.198 kb on + strand, within ABIE40_RS20860at 286.199 kb on - strand, within ABIE40_RS20860at 286.199 kb on - strand, within ABIE40_RS20860at 286.199 kb on - strand, within ABIE40_RS20860at 286.199 kb on - strand, within ABIE40_RS20860at 286.199 kb on - strand, within ABIE40_RS20860at 286.199 kb on - strand, within ABIE40_RS20860at 286.336 kb on + strand, within ABIE40_RS20860at 286.337 kb on - strand, within ABIE40_RS20860at 286.337 kb on - strand, within ABIE40_RS20860at 286.337 kb on - strand, within ABIE40_RS20860at 286.426 kb on + strand, within ABIE40_RS20860at 286.427 kb on - strand, within ABIE40_RS20860at 286.529 kb on + strandat 286.530 kb on - strandat 286.530 kb on - strandat 286.629 kb on + strandat 286.630 kb on - strandat 286.630 kb on - strandat 286.630 kb on - strandat 286.647 kb on + strandat 286.647 kb on + strandat 286.648 kb on - strandat 286.648 kb on - strandat 286.648 kb on - strandat 286.659 kb on + strandat 286.701 kb on + strandat 286.701 kb on + strandat 286.701 kb on + strandat 286.701 kb on + strandat 286.701 kb on + strandat 286.702 kb on - strandat 286.702 kb on - strandat 286.702 kb on - strandat 286.702 kb on - strandat 286.702 kb on - strandat 286.797 kb on + strand, within ABIE40_RS20865at 286.815 kb on + strand, within ABIE40_RS20865at 286.815 kb on + strand, within ABIE40_RS20865at 286.816 kb on - strand, within ABIE40_RS20865at 286.816 kb on - strand, within ABIE40_RS20865at 287.062 kb on - strand, within ABIE40_RS20865at 287.085 kb on + strand, within ABIE40_RS20865at 287.088 kb on + strand, within ABIE40_RS20865at 287.088 kb on + strand, within ABIE40_RS20865at 287.088 kb on + strand, within ABIE40_RS20865at 287.088 kb on + strand, within ABIE40_RS20865at 287.089 kb on - strand, within ABIE40_RS20865at 287.089 kb on - strand, within ABIE40_RS20865at 287.089 kb on - strand, within ABIE40_RS20865at 287.089 kb on - strand, within ABIE40_RS20865at 287.089 kb on - strand, within ABIE40_RS20865at 287.089 kb on - strand, within ABIE40_RS20865at 287.343 kb on + strand, within ABIE40_RS20865at 287.343 kb on + strand, within ABIE40_RS20865at 287.343 kb on + strand, within ABIE40_RS20865at 287.343 kb on + strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.344 kb on - strand, within ABIE40_RS20865at 287.345 kb on + strand, within ABIE40_RS20865at 287.345 kb on + strand, within ABIE40_RS20865at 287.346 kb on - strand, within ABIE40_RS20865at 287.346 kb on - strand, within ABIE40_RS20865at 287.382 kb on + strand, within ABIE40_RS20865at 287.382 kb on + strand, within ABIE40_RS20865at 287.382 kb on + strand, within ABIE40_RS20865at 287.382 kb on + strand, within ABIE40_RS20865at 287.382 kb on + strand, within ABIE40_RS20865at 287.383 kb on - strand, within ABIE40_RS20865at 287.383 kb on - strand, within ABIE40_RS20865at 287.383 kb on - strand, within ABIE40_RS20865at 287.383 kb on - strand, within ABIE40_RS20865at 287.383 kb on - strand, within ABIE40_RS20865at 287.383 kb on - strand, within ABIE40_RS20865at 287.386 kb on + strand, within ABIE40_RS20865at 287.387 kb on - strand, within ABIE40_RS20865at 287.387 kb on - strand, within ABIE40_RS20865at 287.387 kb on - strand, within ABIE40_RS20865at 287.472 kb on + strand, within ABIE40_RS20865at 287.473 kb on - strand, within ABIE40_RS20865at 287.473 kb on - strand, within ABIE40_RS20865at 287.632 kb on - strand, within ABIE40_RS20865at 287.753 kb on + strand, within ABIE40_RS20865at 287.753 kb on + strand, within ABIE40_RS20865at 287.753 kb on + strand, within ABIE40_RS20865at 287.754 kb on - strand, within ABIE40_RS20865at 287.754 kb on - strand, within ABIE40_RS20865at 287.754 kb on - strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.934 kb on + strand, within ABIE40_RS20865at 287.935 kb on - strand, within ABIE40_RS20865at 287.935 kb on - strand, within ABIE40_RS20865at 287.935 kb on - strand, within ABIE40_RS20865at 287.935 kb on - strand, within ABIE40_RS20865at 287.954 kb on + strand, within ABIE40_RS20865at 287.954 kb on + strand, within ABIE40_RS20865at 287.954 kb on + strand, within ABIE40_RS20865at 287.955 kb on - strand, within ABIE40_RS20865at 287.976 kb on + strand, within ABIE40_RS20865at 287.976 kb on + strand, within ABIE40_RS20865at 287.976 kb on + strand, within ABIE40_RS20865at 287.977 kb on - strand, within ABIE40_RS20865at 288.000 kb on + strand, within ABIE40_RS20865at 288.000 kb on + strand, within ABIE40_RS20865at 288.000 kb on + strand, within ABIE40_RS20865at 288.000 kb on + strand, within ABIE40_RS20865at 288.000 kb on + strand, within ABIE40_RS20865at 288.001 kb on - strand, within ABIE40_RS20865at 288.069 kb on + strand, within ABIE40_RS20865at 288.069 kb on + strand, within ABIE40_RS20865at 288.069 kb on + strand, within ABIE40_RS20865at 288.069 kb on + strand, within ABIE40_RS20865at 288.069 kb on + strand, within ABIE40_RS20865at 288.069 kb on + strand, within ABIE40_RS20865at 288.070 kb on - strand, within ABIE40_RS20865at 288.070 kb on - strand, within ABIE40_RS20865at 288.070 kb on - strand, within ABIE40_RS20865at 288.070 kb on - strand, within ABIE40_RS20865at 288.070 kb on - strand, within ABIE40_RS20865at 288.070 kb on - strand, within ABIE40_RS20865at 288.169 kb on - strand, within ABIE40_RS20865at 288.169 kb on - strand, within ABIE40_RS20865at 288.258 kb on + strand, within ABIE40_RS20865at 288.258 kb on + strand, within ABIE40_RS20865at 288.258 kb on + strand, within ABIE40_RS20865at 288.259 kb on - strand, within ABIE40_RS20865at 288.259 kb on - strand, within ABIE40_RS20865at 288.323 kb on - strandat 288.323 kb on - strandat 288.323 kb on - strandat 288.389 kb on - strandat 288.389 kb on - strandat 288.408 kb on + strandat 288.409 kb on - strandat 288.409 kb on - strandat 288.426 kb on + strandat 288.426 kb on + strandat 288.427 kb on - strandat 288.429 kb on + strandat 288.429 kb on + strandat 288.429 kb on + strandat 288.429 kb on + strandat 288.430 kb on - strandat 288.430 kb on - strandat 288.430 kb on - strandat 288.430 kb on - strandat 288.430 kb on - strandat 288.430 kb on - strandat 288.515 kb on + strandat 288.515 kb on + strandat 288.515 kb on + strandat 288.606 kb on + strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.714 kb on + strand, within ABIE40_RS20870at 288.715 kb on - strand, within ABIE40_RS20870at 288.715 kb on - strand, within ABIE40_RS20870at 288.927 kb on + strand, within ABIE40_RS20870at 288.927 kb on + strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 289.107 kb on + strandat 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.176 kb on - strand, within ABIE40_RS20875at 289.176 kb on - strand, within ABIE40_RS20875at 289.176 kb on - strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.279 kb on - strand, within ABIE40_RS20875at 289.279 kb on - strand, within ABIE40_RS20875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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285,822 + -0.4
285,822 + -0.4
285,823 - -2.0
285,823 - -0.7
285,823 - +0.0
285,940 + ABIE40_RS20860 0.17 +0.4
285,940 + ABIE40_RS20860 0.17 -0.1
285,940 + ABIE40_RS20860 0.17 -0.7
285,941 - ABIE40_RS20860 0.17 +0.2
285,941 - ABIE40_RS20860 0.17 -0.0
286,015 + ABIE40_RS20860 0.27 -0.9
286,015 + ABIE40_RS20860 0.27 -0.7
286,016 - ABIE40_RS20860 0.28 +1.7
286,016 - ABIE40_RS20860 0.28 -0.5
286,024 + ABIE40_RS20860 0.29 +0.8
286,141 + ABIE40_RS20860 0.45 +0.0
286,142 - ABIE40_RS20860 0.46 -0.2
286,142 - ABIE40_RS20860 0.46 -0.3
286,142 - ABIE40_RS20860 0.46 -0.9
286,142 - ABIE40_RS20860 0.46 -0.3
286,198 + ABIE40_RS20860 0.54 +0.3
286,198 + ABIE40_RS20860 0.54 -0.3
286,198 + ABIE40_RS20860 0.54 -0.3
286,199 - ABIE40_RS20860 0.54 -1.1
286,199 - ABIE40_RS20860 0.54 -0.1
286,199 - ABIE40_RS20860 0.54 +0.3
286,199 - ABIE40_RS20860 0.54 +0.0
286,199 - ABIE40_RS20860 0.54 -0.3
286,199 - ABIE40_RS20860 0.54 -2.1
286,336 + ABIE40_RS20860 0.73 +1.3
286,337 - ABIE40_RS20860 0.74 -0.8
286,337 - ABIE40_RS20860 0.74 -1.3
286,337 - ABIE40_RS20860 0.74 +0.4
286,426 + ABIE40_RS20860 0.86 -0.1
286,427 - ABIE40_RS20860 0.86 +1.1
286,529 + +2.0
286,530 - -0.0
286,530 - -2.0
286,629 + +0.2
286,630 - +0.4
286,630 - -0.3
286,630 - +0.9
286,647 + +1.0
286,647 + +0.3
286,648 - -1.3
286,648 - -1.7
286,648 - -0.5
286,659 + -0.4
286,701 + +0.6
286,701 + +1.0
286,701 + -0.4
286,701 + +0.0
286,701 + -0.3
286,702 - +1.3
286,702 - -0.4
286,702 - +1.0
286,702 - -0.3
286,702 - +0.3
286,797 + ABIE40_RS20865 0.14 -0.3
286,815 + ABIE40_RS20865 0.15 -0.5
286,815 + ABIE40_RS20865 0.15 +0.1
286,816 - ABIE40_RS20865 0.15 -0.1
286,816 - ABIE40_RS20865 0.15 +1.2
287,062 - ABIE40_RS20865 0.27 +0.5
287,085 + ABIE40_RS20865 0.29 +0.6
287,088 + ABIE40_RS20865 0.29 -1.8
287,088 + ABIE40_RS20865 0.29 +0.6
287,088 + ABIE40_RS20865 0.29 -1.1
287,088 + ABIE40_RS20865 0.29 -1.8
287,089 - ABIE40_RS20865 0.29 -0.3
287,089 - ABIE40_RS20865 0.29 -0.1
287,089 - ABIE40_RS20865 0.29 +0.6
287,089 - ABIE40_RS20865 0.29 -2.1
287,089 - ABIE40_RS20865 0.29 -0.0
287,089 - ABIE40_RS20865 0.29 -1.4
287,343 + ABIE40_RS20865 0.42 -1.4
287,343 + ABIE40_RS20865 0.42 -0.1
287,343 + ABIE40_RS20865 0.42 -2.2
287,343 + ABIE40_RS20865 0.42 -1.4
287,344 - ABIE40_RS20865 0.42 -1.9
287,344 - ABIE40_RS20865 0.42 -0.7
287,344 - ABIE40_RS20865 0.42 +0.5
287,344 - ABIE40_RS20865 0.42 +0.0
287,344 - ABIE40_RS20865 0.42 +0.5
287,344 - ABIE40_RS20865 0.42 +0.7
287,344 - ABIE40_RS20865 0.42 -0.1
287,344 - ABIE40_RS20865 0.42 +0.2
287,344 - ABIE40_RS20865 0.42 -1.7
287,344 - ABIE40_RS20865 0.42 -0.5
287,345 + ABIE40_RS20865 0.42 -0.6
287,345 + ABIE40_RS20865 0.42 +0.2
287,346 - ABIE40_RS20865 0.42 +0.3
287,346 - ABIE40_RS20865 0.42 +0.3
287,382 + ABIE40_RS20865 0.44 -0.5
287,382 + ABIE40_RS20865 0.44 +0.2
287,382 + ABIE40_RS20865 0.44 -1.5
287,382 + ABIE40_RS20865 0.44 -0.4
287,382 + ABIE40_RS20865 0.44 +0.4
287,383 - ABIE40_RS20865 0.44 -0.2
287,383 - ABIE40_RS20865 0.44 +0.0
287,383 - ABIE40_RS20865 0.44 -0.4
287,383 - ABIE40_RS20865 0.44 -1.8
287,383 - ABIE40_RS20865 0.44 -0.3
287,383 - ABIE40_RS20865 0.44 -0.1
287,386 + ABIE40_RS20865 0.44 +1.7
287,387 - ABIE40_RS20865 0.44 -0.1
287,387 - ABIE40_RS20865 0.44 -1.5
287,387 - ABIE40_RS20865 0.44 -1.1
287,472 + ABIE40_RS20865 0.48 -1.4
287,473 - ABIE40_RS20865 0.48 +0.4
287,473 - ABIE40_RS20865 0.48 -0.0
287,632 - ABIE40_RS20865 0.56 -0.1
287,753 + ABIE40_RS20865 0.62 -0.1
287,753 + ABIE40_RS20865 0.62 -0.7
287,753 + ABIE40_RS20865 0.62 -0.1
287,754 - ABIE40_RS20865 0.62 +0.2
287,754 - ABIE40_RS20865 0.62 -1.7
287,754 - ABIE40_RS20865 0.62 +0.8
287,934 + ABIE40_RS20865 0.71 +1.1
287,934 + ABIE40_RS20865 0.71 -1.7
287,934 + ABIE40_RS20865 0.71 -0.2
287,934 + ABIE40_RS20865 0.71 -0.4
287,934 + ABIE40_RS20865 0.71 -0.4
287,934 + ABIE40_RS20865 0.71 +0.9
287,934 + ABIE40_RS20865 0.71 +0.5
287,935 - ABIE40_RS20865 0.72 -0.9
287,935 - ABIE40_RS20865 0.72 -0.8
287,935 - ABIE40_RS20865 0.72 -0.8
287,935 - ABIE40_RS20865 0.72 +0.1
287,954 + ABIE40_RS20865 0.72 -2.0
287,954 + ABIE40_RS20865 0.72 +0.6
287,954 + ABIE40_RS20865 0.72 -0.0
287,955 - ABIE40_RS20865 0.73 +0.1
287,976 + ABIE40_RS20865 0.74 +1.3
287,976 + ABIE40_RS20865 0.74 -0.0
287,976 + ABIE40_RS20865 0.74 +1.5
287,977 - ABIE40_RS20865 0.74 -1.7
288,000 + ABIE40_RS20865 0.75 -0.6
288,000 + ABIE40_RS20865 0.75 -0.6
288,000 + ABIE40_RS20865 0.75 -0.4
288,000 + ABIE40_RS20865 0.75 -0.4
288,000 + ABIE40_RS20865 0.75 +0.6
288,001 - ABIE40_RS20865 0.75 +0.3
288,069 + ABIE40_RS20865 0.78 +0.5
288,069 + ABIE40_RS20865 0.78 +1.5
288,069 + ABIE40_RS20865 0.78 -0.1
288,069 + ABIE40_RS20865 0.78 -1.5
288,069 + ABIE40_RS20865 0.78 -0.2
288,069 + ABIE40_RS20865 0.78 -0.4
288,070 - ABIE40_RS20865 0.78 +0.7
288,070 - ABIE40_RS20865 0.78 -0.9
288,070 - ABIE40_RS20865 0.78 -0.5
288,070 - ABIE40_RS20865 0.78 +1.5
288,070 - ABIE40_RS20865 0.78 -1.0
288,070 - ABIE40_RS20865 0.78 -1.4
288,169 - ABIE40_RS20865 0.83 -0.3
288,169 - ABIE40_RS20865 0.83 -0.4
288,258 + ABIE40_RS20865 0.88 -1.6
288,258 + ABIE40_RS20865 0.88 +0.5
288,258 + ABIE40_RS20865 0.88 -1.1
288,259 - ABIE40_RS20865 0.88 -0.2
288,259 - ABIE40_RS20865 0.88 +0.0
288,323 - +0.0
288,323 - -0.3
288,323 - +0.2
288,389 - -1.2
288,389 - -0.1
288,408 + +0.3
288,409 - -0.8
288,409 - -0.2
288,426 + -0.7
288,426 + +0.0
288,427 - -1.4
288,429 + -1.6
288,429 + +1.8
288,429 + -0.4
288,429 + -0.2
288,430 - +0.7
288,430 - -2.0
288,430 - -1.6
288,430 - +0.0
288,430 - +0.9
288,430 - -2.3
288,515 + -0.9
288,515 + +0.0
288,515 + -0.3
288,606 + ABIE40_RS20870 0.17 -0.3
288,607 - ABIE40_RS20870 0.17 -0.6
288,607 - ABIE40_RS20870 0.17 +0.7
288,607 - ABIE40_RS20870 0.17 -0.5
288,607 - ABIE40_RS20870 0.17 -0.2
288,714 + ABIE40_RS20870 0.34 +1.6
288,715 - ABIE40_RS20870 0.34 +2.0
288,715 - ABIE40_RS20870 0.34 +1.1
288,927 + ABIE40_RS20870 0.68 +0.7
288,927 + ABIE40_RS20870 0.68 +1.3
288,928 - ABIE40_RS20870 0.68 -0.1
288,928 - ABIE40_RS20870 0.68 +0.0
288,928 - ABIE40_RS20870 0.68 +0.8
288,928 - ABIE40_RS20870 0.68 +0.0
289,107 + -1.1
289,175 + ABIE40_RS20875 0.13 +0.3
289,175 + ABIE40_RS20875 0.13 -0.8
289,175 + ABIE40_RS20875 0.13 -0.0
289,175 + ABIE40_RS20875 0.13 +0.0
289,175 + ABIE40_RS20875 0.13 -0.1
289,175 + ABIE40_RS20875 0.13 +0.1
289,176 - ABIE40_RS20875 0.14 -0.5
289,176 - ABIE40_RS20875 0.14 -0.3
289,176 - ABIE40_RS20875 0.14 +1.1
289,278 + ABIE40_RS20875 0.42 -1.1
289,278 + ABIE40_RS20875 0.42 -0.0
289,278 + ABIE40_RS20875 0.42 -0.2
289,278 + ABIE40_RS20875 0.42 -0.8
289,278 + ABIE40_RS20875 0.42 -0.3
289,279 - ABIE40_RS20875 0.42 -0.4
289,279 - ABIE40_RS20875 0.42 +0.5

Or see this region's nucleotide sequence