Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04250 and ABIE40_RS04255 are separated by 72 nucleotides ABIE40_RS04255 and ABIE40_RS04260 overlap by 4 nucleotides ABIE40_RS04260 and ABIE40_RS04265 are separated by 200 nucleotides ABIE40_RS04265 and ABIE40_RS04270 are separated by 150 nucleotides
ABIE40_RS04250: ABIE40_RS04250 - helix-turn-helix transcriptional regulator, at 839,441 to 840,124
_RS04250
ABIE40_RS04255: ABIE40_RS04255 - NIPSNAP family protein, at 840,197 to 840,526
_RS04255
ABIE40_RS04260: ABIE40_RS04260 - antibiotic biosynthesis monooxygenase, at 840,523 to 840,879
_RS04260
ABIE40_RS04265: ABIE40_RS04265 - pilus assembly protein TadG-related protein, at 841,080 to 842,453
_RS04265
ABIE40_RS04270: ABIE40_RS04270 - site-specific DNA-methyltransferase, at 842,604 to 843,734
_RS04270
Position (kb) 841
842
843 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 840.125 kb on - strand at 840.257 kb on + strand, within ABIE40_RS04255 at 840.257 kb on + strand, within ABIE40_RS04255 at 840.257 kb on + strand, within ABIE40_RS04255 at 840.257 kb on + strand, within ABIE40_RS04255 at 840.258 kb on - strand, within ABIE40_RS04255 at 840.258 kb on - strand, within ABIE40_RS04255 at 840.357 kb on - strand, within ABIE40_RS04255 at 840.357 kb on - strand, within ABIE40_RS04255 at 840.357 kb on - strand, within ABIE40_RS04255 at 840.381 kb on - strand, within ABIE40_RS04255 at 840.389 kb on + strand, within ABIE40_RS04255 at 840.390 kb on - strand, within ABIE40_RS04255 at 840.390 kb on - strand, within ABIE40_RS04255 at 840.390 kb on - strand, within ABIE40_RS04255 at 840.431 kb on + strand, within ABIE40_RS04255 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.574 kb on + strand, within ABIE40_RS04260 at 840.575 kb on - strand, within ABIE40_RS04260 at 840.575 kb on - strand, within ABIE40_RS04260 at 840.575 kb on - strand, within ABIE40_RS04260 at 840.575 kb on - strand, within ABIE40_RS04260 at 840.798 kb on + strand, within ABIE40_RS04260 at 840.798 kb on + strand, within ABIE40_RS04260 at 840.798 kb on + strand, within ABIE40_RS04260 at 841.025 kb on - strand at 841.059 kb on + strand at 841.060 kb on - strand at 841.073 kb on - strand at 841.185 kb on + strand at 841.185 kb on + strand at 841.186 kb on - strand at 841.186 kb on - strand at 841.186 kb on - strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.187 kb on + strand at 841.188 kb on - strand at 841.188 kb on - strand at 841.188 kb on - strand at 841.188 kb on - strand at 841.272 kb on + strand, within ABIE40_RS04265 at 841.273 kb on - strand, within ABIE40_RS04265 at 841.554 kb on + strand, within ABIE40_RS04265 at 841.555 kb on - strand, within ABIE40_RS04265 at 841.566 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.731 kb on + strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.732 kb on - strand, within ABIE40_RS04265 at 841.852 kb on - strand, within ABIE40_RS04265 at 841.852 kb on - strand, within ABIE40_RS04265 at 841.887 kb on + strand, within ABIE40_RS04265 at 841.887 kb on + strand, within ABIE40_RS04265 at 841.887 kb on + strand, within ABIE40_RS04265 at 841.887 kb on + strand, within ABIE40_RS04265 at 841.888 kb on - strand, within ABIE40_RS04265 at 841.890 kb on + strand, within ABIE40_RS04265 at 841.890 kb on + strand, within ABIE40_RS04265 at 841.890 kb on + strand, within ABIE40_RS04265 at 841.890 kb on + strand, within ABIE40_RS04265 at 841.890 kb on + strand, within ABIE40_RS04265 at 841.891 kb on - strand, within ABIE40_RS04265 at 841.891 kb on - strand, within ABIE40_RS04265 at 842.244 kb on + strand, within ABIE40_RS04265 at 842.244 kb on + strand, within ABIE40_RS04265 at 842.244 kb on + strand, within ABIE40_RS04265 at 842.244 kb on + strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.245 kb on - strand, within ABIE40_RS04265 at 842.253 kb on + strand, within ABIE40_RS04265 at 842.253 kb on + strand, within ABIE40_RS04265 at 842.253 kb on + strand, within ABIE40_RS04265 at 842.254 kb on - strand, within ABIE40_RS04265 at 842.254 kb on - strand, within ABIE40_RS04265 at 842.254 kb on - strand, within ABIE40_RS04265 at 842.316 kb on - strand at 842.488 kb on + strand at 842.489 kb on - strand at 842.489 kb on - strand at 842.489 kb on - strand at 842.496 kb on + strand at 842.496 kb on + strand at 842.496 kb on + strand at 842.497 kb on - strand at 842.497 kb on - strand at 842.497 kb on - strand at 842.507 kb on + strand at 842.507 kb on + strand at 842.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 840,125 - -0.3 840,257 + ABIE40_RS04255 0.18 -0.6 840,257 + ABIE40_RS04255 0.18 -1.1 840,257 + ABIE40_RS04255 0.18 +0.3 840,257 + ABIE40_RS04255 0.18 -0.1 840,258 - ABIE40_RS04255 0.18 -1.9 840,258 - ABIE40_RS04255 0.18 +0.9 840,357 - ABIE40_RS04255 0.48 +0.0 840,357 - ABIE40_RS04255 0.48 -0.2 840,357 - ABIE40_RS04255 0.48 -2.1 840,381 - ABIE40_RS04255 0.56 +0.2 840,389 + ABIE40_RS04255 0.58 +1.3 840,390 - ABIE40_RS04255 0.58 +0.5 840,390 - ABIE40_RS04255 0.58 -0.2 840,390 - ABIE40_RS04255 0.58 +0.2 840,431 + ABIE40_RS04255 0.71 -0.3 840,574 + ABIE40_RS04260 0.14 -0.5 840,574 + ABIE40_RS04260 0.14 +0.9 840,574 + ABIE40_RS04260 0.14 -0.4 840,574 + ABIE40_RS04260 0.14 +2.1 840,574 + ABIE40_RS04260 0.14 +1.5 840,574 + ABIE40_RS04260 0.14 +0.3 840,574 + ABIE40_RS04260 0.14 +0.3 840,575 - ABIE40_RS04260 0.15 -0.2 840,575 - ABIE40_RS04260 0.15 +1.5 840,575 - ABIE40_RS04260 0.15 +1.2 840,575 - ABIE40_RS04260 0.15 -0.1 840,798 + ABIE40_RS04260 0.77 -0.9 840,798 + ABIE40_RS04260 0.77 -0.8 840,798 + ABIE40_RS04260 0.77 +0.1 841,025 - -0.8 841,059 + -0.4 841,060 - +0.6 841,073 - -0.5 841,185 + +0.4 841,185 + -0.0 841,186 - -0.4 841,186 - +0.1 841,186 - +0.7 841,187 + +2.0 841,187 + +0.4 841,187 + +0.4 841,187 + -0.0 841,187 + +0.4 841,187 + -1.0 841,187 + -0.2 841,187 + -0.9 841,188 - +0.1 841,188 - +0.7 841,188 - +0.1 841,188 - -0.3 841,272 + ABIE40_RS04265 0.14 -0.1 841,273 - ABIE40_RS04265 0.14 +0.7 841,554 + ABIE40_RS04265 0.34 -1.6 841,555 - ABIE40_RS04265 0.35 +0.1 841,566 + ABIE40_RS04265 0.35 -0.8 841,731 + ABIE40_RS04265 0.47 -0.3 841,731 + ABIE40_RS04265 0.47 -0.8 841,731 + ABIE40_RS04265 0.47 -0.6 841,731 + ABIE40_RS04265 0.47 -0.5 841,731 + ABIE40_RS04265 0.47 +2.1 841,731 + ABIE40_RS04265 0.47 +0.8 841,731 + ABIE40_RS04265 0.47 -0.8 841,732 - ABIE40_RS04265 0.47 +0.2 841,732 - ABIE40_RS04265 0.47 +0.7 841,732 - ABIE40_RS04265 0.47 -0.0 841,732 - ABIE40_RS04265 0.47 -0.1 841,732 - ABIE40_RS04265 0.47 -0.2 841,732 - ABIE40_RS04265 0.47 -0.3 841,732 - ABIE40_RS04265 0.47 +0.2 841,732 - ABIE40_RS04265 0.47 -1.2 841,732 - ABIE40_RS04265 0.47 +0.8 841,852 - ABIE40_RS04265 0.56 -1.1 841,852 - ABIE40_RS04265 0.56 +0.4 841,887 + ABIE40_RS04265 0.59 -1.2 841,887 + ABIE40_RS04265 0.59 -0.3 841,887 + ABIE40_RS04265 0.59 -0.6 841,887 + ABIE40_RS04265 0.59 -2.0 841,888 - ABIE40_RS04265 0.59 -0.4 841,890 + ABIE40_RS04265 0.59 +0.1 841,890 + ABIE40_RS04265 0.59 -0.0 841,890 + ABIE40_RS04265 0.59 -0.2 841,890 + ABIE40_RS04265 0.59 -1.3 841,890 + ABIE40_RS04265 0.59 -0.8 841,891 - ABIE40_RS04265 0.59 +0.5 841,891 - ABIE40_RS04265 0.59 -0.3 842,244 + ABIE40_RS04265 0.85 -1.5 842,244 + ABIE40_RS04265 0.85 +0.8 842,244 + ABIE40_RS04265 0.85 +1.5 842,244 + ABIE40_RS04265 0.85 -0.0 842,245 - ABIE40_RS04265 0.85 -2.0 842,245 - ABIE40_RS04265 0.85 -3.8 842,245 - ABIE40_RS04265 0.85 +0.1 842,245 - ABIE40_RS04265 0.85 +0.0 842,245 - ABIE40_RS04265 0.85 +0.5 842,245 - ABIE40_RS04265 0.85 +0.4 842,245 - ABIE40_RS04265 0.85 -0.1 842,253 + ABIE40_RS04265 0.85 -1.6 842,253 + ABIE40_RS04265 0.85 +0.5 842,253 + ABIE40_RS04265 0.85 +0.9 842,254 - ABIE40_RS04265 0.85 -1.7 842,254 - ABIE40_RS04265 0.85 -0.4 842,254 - ABIE40_RS04265 0.85 +0.5 842,316 - +0.6 842,488 + -1.0 842,489 - -0.1 842,489 - +0.3 842,489 - -0.1 842,496 + +0.9 842,496 + +1.1 842,496 + +1.7 842,497 - +0.1 842,497 - -0.2 842,497 - -0.5 842,507 + -1.5 842,507 + -0.5 842,581 + +1.2
Or see this region's nucleotide sequence