Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04225

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04215 and ABIE40_RS04220 overlap by 4 nucleotidesABIE40_RS04220 and ABIE40_RS04225 are separated by 28 nucleotidesABIE40_RS04225 and ABIE40_RS04230 are separated by 25 nucleotides ABIE40_RS04215: ABIE40_RS04215 - sensor domain-containing phosphodiesterase, at 830,498 to 833,410 _RS04215 ABIE40_RS04220: ABIE40_RS04220 - GNAT family protein, at 833,407 to 834,021 _RS04220 ABIE40_RS04225: ABIE40_RS04225 - pitrilysin family protein, at 834,050 to 835,348 _RS04225 ABIE40_RS04230: ABIE40_RS04230 - threonine synthase, at 835,374 to 836,774 _RS04230 Position (kb) 834 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 833.499 kb on - strand, within ABIE40_RS04220at 833.613 kb on + strand, within ABIE40_RS04220at 833.613 kb on + strand, within ABIE40_RS04220at 833.614 kb on + strand, within ABIE40_RS04220at 833.614 kb on - strand, within ABIE40_RS04220at 833.614 kb on - strand, within ABIE40_RS04220at 833.614 kb on - strand, within ABIE40_RS04220at 833.615 kb on + strand, within ABIE40_RS04220at 833.615 kb on + strand, within ABIE40_RS04220at 833.615 kb on + strand, within ABIE40_RS04220at 833.615 kb on + strand, within ABIE40_RS04220at 833.616 kb on - strand, within ABIE40_RS04220at 833.616 kb on - strand, within ABIE40_RS04220at 833.616 kb on - strand, within ABIE40_RS04220at 833.616 kb on - strand, within ABIE40_RS04220at 833.616 kb on - strand, within ABIE40_RS04220at 833.620 kb on + strand, within ABIE40_RS04220at 833.620 kb on + strand, within ABIE40_RS04220at 833.620 kb on + strand, within ABIE40_RS04220at 833.621 kb on - strand, within ABIE40_RS04220at 833.621 kb on - strand, within ABIE40_RS04220at 833.621 kb on - strand, within ABIE40_RS04220at 833.622 kb on + strand, within ABIE40_RS04220at 833.622 kb on + strand, within ABIE40_RS04220at 833.622 kb on + strand, within ABIE40_RS04220at 833.622 kb on + strand, within ABIE40_RS04220at 833.622 kb on + strand, within ABIE40_RS04220at 833.623 kb on - strand, within ABIE40_RS04220at 833.623 kb on - strand, within ABIE40_RS04220at 833.623 kb on - strand, within ABIE40_RS04220at 833.646 kb on + strand, within ABIE40_RS04220at 833.646 kb on + strand, within ABIE40_RS04220at 833.646 kb on + strand, within ABIE40_RS04220at 833.647 kb on - strand, within ABIE40_RS04220at 833.647 kb on - strand, within ABIE40_RS04220at 833.647 kb on - strand, within ABIE40_RS04220at 833.647 kb on - strand, within ABIE40_RS04220at 833.647 kb on - strand, within ABIE40_RS04220at 833.647 kb on - strand, within ABIE40_RS04220at 833.719 kb on - strand, within ABIE40_RS04220at 833.720 kb on + strand, within ABIE40_RS04220at 833.721 kb on - strand, within ABIE40_RS04220at 833.721 kb on - strand, within ABIE40_RS04220at 833.721 kb on - strand, within ABIE40_RS04220at 833.721 kb on - strand, within ABIE40_RS04220at 833.721 kb on - strand, within ABIE40_RS04220at 833.721 kb on - strand, within ABIE40_RS04220at 833.730 kb on + strand, within ABIE40_RS04220at 833.731 kb on - strand, within ABIE40_RS04220at 833.731 kb on - strand, within ABIE40_RS04220at 833.798 kb on + strand, within ABIE40_RS04220at 833.798 kb on + strand, within ABIE40_RS04220at 833.798 kb on + strand, within ABIE40_RS04220at 833.798 kb on + strand, within ABIE40_RS04220at 833.798 kb on + strand, within ABIE40_RS04220at 833.799 kb on - strand, within ABIE40_RS04220at 833.799 kb on - strand, within ABIE40_RS04220at 833.799 kb on - strand, within ABIE40_RS04220at 833.799 kb on - strand, within ABIE40_RS04220at 833.799 kb on - strand, within ABIE40_RS04220at 833.799 kb on - strand, within ABIE40_RS04220at 833.955 kb on - strand, within ABIE40_RS04220at 834.255 kb on + strand, within ABIE40_RS04225at 834.255 kb on + strand, within ABIE40_RS04225at 834.256 kb on - strand, within ABIE40_RS04225at 834.256 kb on - strand, within ABIE40_RS04225at 834.256 kb on - strand, within ABIE40_RS04225at 834.489 kb on + strand, within ABIE40_RS04225at 834.489 kb on + strand, within ABIE40_RS04225at 834.489 kb on + strand, within ABIE40_RS04225at 834.489 kb on + strand, within ABIE40_RS04225at 834.489 kb on + strand, within ABIE40_RS04225at 834.490 kb on - strand, within ABIE40_RS04225at 834.490 kb on - strand, within ABIE40_RS04225at 834.490 kb on - strand, within ABIE40_RS04225at 834.490 kb on - strand, within ABIE40_RS04225at 834.498 kb on + strand, within ABIE40_RS04225at 834.499 kb on - strand, within ABIE40_RS04225at 834.562 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.585 kb on + strand, within ABIE40_RS04225at 834.586 kb on - strand, within ABIE40_RS04225at 834.586 kb on - strand, within ABIE40_RS04225at 834.586 kb on - strand, within ABIE40_RS04225at 834.586 kb on - strand, within ABIE40_RS04225at 834.604 kb on - strand, within ABIE40_RS04225at 834.604 kb on - strand, within ABIE40_RS04225at 834.677 kb on - strand, within ABIE40_RS04225at 834.677 kb on - strand, within ABIE40_RS04225at 834.678 kb on + strand, within ABIE40_RS04225at 834.679 kb on - strand, within ABIE40_RS04225at 834.679 kb on - strand, within ABIE40_RS04225at 834.679 kb on - strand, within ABIE40_RS04225at 834.771 kb on - strand, within ABIE40_RS04225at 834.810 kb on + strand, within ABIE40_RS04225at 834.810 kb on + strand, within ABIE40_RS04225at 834.810 kb on + strand, within ABIE40_RS04225at 834.810 kb on + strand, within ABIE40_RS04225at 834.810 kb on + strand, within ABIE40_RS04225at 834.811 kb on - strand, within ABIE40_RS04225at 834.811 kb on - strand, within ABIE40_RS04225at 834.811 kb on - strand, within ABIE40_RS04225at 834.811 kb on - strand, within ABIE40_RS04225at 834.811 kb on - strand, within ABIE40_RS04225at 834.825 kb on + strand, within ABIE40_RS04225at 834.825 kb on + strand, within ABIE40_RS04225at 834.826 kb on - strand, within ABIE40_RS04225at 834.826 kb on - strand, within ABIE40_RS04225at 834.826 kb on - strand, within ABIE40_RS04225at 835.045 kb on + strand, within ABIE40_RS04225at 835.087 kb on - strand, within ABIE40_RS04225at 835.089 kb on + strand, within ABIE40_RS04225at 835.089 kb on + strand, within ABIE40_RS04225at 835.089 kb on + strand, within ABIE40_RS04225at 835.089 kb on + strand, within ABIE40_RS04225at 835.089 kb on + strand, within ABIE40_RS04225at 835.089 kb on + strand, within ABIE40_RS04225at 835.090 kb on - strand, within ABIE40_RS04225at 835.090 kb on - strand, within ABIE40_RS04225at 835.090 kb on - strand, within ABIE40_RS04225at 835.090 kb on - strand, within ABIE40_RS04225at 835.090 kb on - strand, within ABIE40_RS04225at 835.090 kb on - strand, within ABIE40_RS04225at 835.307 kb on + strandat 835.307 kb on + strandat 835.307 kb on + strandat 835.307 kb on + strandat 835.308 kb on - strandat 835.308 kb on - strandat 835.353 kb on + strandat 835.354 kb on - strandat 835.354 kb on - strandat 835.375 kb on + strandat 835.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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833,499 - ABIE40_RS04220 0.15 -0.1
833,613 + ABIE40_RS04220 0.33 +0.2
833,613 + ABIE40_RS04220 0.33 +0.8
833,614 + ABIE40_RS04220 0.34 +0.0
833,614 - ABIE40_RS04220 0.34 +0.7
833,614 - ABIE40_RS04220 0.34 -1.3
833,614 - ABIE40_RS04220 0.34 -0.0
833,615 + ABIE40_RS04220 0.34 +0.6
833,615 + ABIE40_RS04220 0.34 +1.5
833,615 + ABIE40_RS04220 0.34 +0.1
833,615 + ABIE40_RS04220 0.34 -2.0
833,616 - ABIE40_RS04220 0.34 -0.8
833,616 - ABIE40_RS04220 0.34 +0.7
833,616 - ABIE40_RS04220 0.34 -0.1
833,616 - ABIE40_RS04220 0.34 +2.5
833,616 - ABIE40_RS04220 0.34 +0.9
833,620 + ABIE40_RS04220 0.35 +0.1
833,620 + ABIE40_RS04220 0.35 +0.5
833,620 + ABIE40_RS04220 0.35 +0.5
833,621 - ABIE40_RS04220 0.35 +0.7
833,621 - ABIE40_RS04220 0.35 +0.1
833,621 - ABIE40_RS04220 0.35 +1.8
833,622 + ABIE40_RS04220 0.35 +0.4
833,622 + ABIE40_RS04220 0.35 +0.8
833,622 + ABIE40_RS04220 0.35 +0.6
833,622 + ABIE40_RS04220 0.35 +0.2
833,622 + ABIE40_RS04220 0.35 +0.5
833,623 - ABIE40_RS04220 0.35 -0.5
833,623 - ABIE40_RS04220 0.35 -0.9
833,623 - ABIE40_RS04220 0.35 +0.1
833,646 + ABIE40_RS04220 0.39 +1.3
833,646 + ABIE40_RS04220 0.39 -0.9
833,646 + ABIE40_RS04220 0.39 +0.1
833,647 - ABIE40_RS04220 0.39 -0.8
833,647 - ABIE40_RS04220 0.39 -0.9
833,647 - ABIE40_RS04220 0.39 -0.1
833,647 - ABIE40_RS04220 0.39 -2.1
833,647 - ABIE40_RS04220 0.39 +0.3
833,647 - ABIE40_RS04220 0.39 -0.4
833,719 - ABIE40_RS04220 0.51 -2.5
833,720 + ABIE40_RS04220 0.51 -1.1
833,721 - ABIE40_RS04220 0.51 +1.0
833,721 - ABIE40_RS04220 0.51 -0.1
833,721 - ABIE40_RS04220 0.51 -0.0
833,721 - ABIE40_RS04220 0.51 +0.6
833,721 - ABIE40_RS04220 0.51 -0.4
833,721 - ABIE40_RS04220 0.51 -1.0
833,730 + ABIE40_RS04220 0.53 -0.0
833,731 - ABIE40_RS04220 0.53 +0.1
833,731 - ABIE40_RS04220 0.53 +0.2
833,798 + ABIE40_RS04220 0.64 +0.2
833,798 + ABIE40_RS04220 0.64 -0.7
833,798 + ABIE40_RS04220 0.64 -1.5
833,798 + ABIE40_RS04220 0.64 -0.0
833,798 + ABIE40_RS04220 0.64 -0.5
833,799 - ABIE40_RS04220 0.64 +0.2
833,799 - ABIE40_RS04220 0.64 -0.8
833,799 - ABIE40_RS04220 0.64 -0.7
833,799 - ABIE40_RS04220 0.64 -1.5
833,799 - ABIE40_RS04220 0.64 -0.4
833,799 - ABIE40_RS04220 0.64 +0.1
833,955 - ABIE40_RS04220 0.89 +0.9
834,255 + ABIE40_RS04225 0.16 -1.5
834,255 + ABIE40_RS04225 0.16 -0.5
834,256 - ABIE40_RS04225 0.16 -2.8
834,256 - ABIE40_RS04225 0.16 -1.2
834,256 - ABIE40_RS04225 0.16 -1.8
834,489 + ABIE40_RS04225 0.34 -1.5
834,489 + ABIE40_RS04225 0.34 -1.9
834,489 + ABIE40_RS04225 0.34 -1.5
834,489 + ABIE40_RS04225 0.34 -0.9
834,489 + ABIE40_RS04225 0.34 -0.3
834,490 - ABIE40_RS04225 0.34 -0.5
834,490 - ABIE40_RS04225 0.34 -1.3
834,490 - ABIE40_RS04225 0.34 -2.1
834,490 - ABIE40_RS04225 0.34 -0.7
834,498 + ABIE40_RS04225 0.34 -1.7
834,499 - ABIE40_RS04225 0.35 -0.3
834,562 + ABIE40_RS04225 0.39 -1.3
834,585 + ABIE40_RS04225 0.41 -1.3
834,585 + ABIE40_RS04225 0.41 -1.5
834,585 + ABIE40_RS04225 0.41 -1.3
834,585 + ABIE40_RS04225 0.41 -1.8
834,585 + ABIE40_RS04225 0.41 -2.7
834,585 + ABIE40_RS04225 0.41 -1.7
834,585 + ABIE40_RS04225 0.41 -0.2
834,586 - ABIE40_RS04225 0.41 -1.9
834,586 - ABIE40_RS04225 0.41 -0.5
834,586 - ABIE40_RS04225 0.41 -0.8
834,586 - ABIE40_RS04225 0.41 -2.8
834,604 - ABIE40_RS04225 0.43 -3.2
834,604 - ABIE40_RS04225 0.43 -1.8
834,677 - ABIE40_RS04225 0.48 -1.5
834,677 - ABIE40_RS04225 0.48 +0.7
834,678 + ABIE40_RS04225 0.48 -2.1
834,679 - ABIE40_RS04225 0.48 +0.1
834,679 - ABIE40_RS04225 0.48 -2.2
834,679 - ABIE40_RS04225 0.48 -0.8
834,771 - ABIE40_RS04225 0.56 -0.8
834,810 + ABIE40_RS04225 0.59 -0.4
834,810 + ABIE40_RS04225 0.59 -0.7
834,810 + ABIE40_RS04225 0.59 -1.5
834,810 + ABIE40_RS04225 0.59 -1.7
834,810 + ABIE40_RS04225 0.59 -0.2
834,811 - ABIE40_RS04225 0.59 -0.3
834,811 - ABIE40_RS04225 0.59 -0.5
834,811 - ABIE40_RS04225 0.59 -0.2
834,811 - ABIE40_RS04225 0.59 -0.3
834,811 - ABIE40_RS04225 0.59 -0.4
834,825 + ABIE40_RS04225 0.60 -1.9
834,825 + ABIE40_RS04225 0.60 -1.2
834,826 - ABIE40_RS04225 0.60 -3.2
834,826 - ABIE40_RS04225 0.60 -0.8
834,826 - ABIE40_RS04225 0.60 -2.0
835,045 + ABIE40_RS04225 0.77 -1.2
835,087 - ABIE40_RS04225 0.80 -2.7
835,089 + ABIE40_RS04225 0.80 -0.2
835,089 + ABIE40_RS04225 0.80 -1.7
835,089 + ABIE40_RS04225 0.80 -3.1
835,089 + ABIE40_RS04225 0.80 +0.6
835,089 + ABIE40_RS04225 0.80 -2.6
835,089 + ABIE40_RS04225 0.80 -0.8
835,090 - ABIE40_RS04225 0.80 -1.7
835,090 - ABIE40_RS04225 0.80 +0.6
835,090 - ABIE40_RS04225 0.80 +0.2
835,090 - ABIE40_RS04225 0.80 -1.5
835,090 - ABIE40_RS04225 0.80 -1.4
835,090 - ABIE40_RS04225 0.80 -1.0
835,307 + -2.1
835,307 + -1.5
835,307 + -1.0
835,307 + -2.6
835,308 - -1.7
835,308 - -1.6
835,353 + -0.7
835,354 - -0.7
835,354 - -0.7
835,375 + -0.1
835,376 - -0.1

Or see this region's nucleotide sequence