Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28885 and ABID97_RS28890 overlap by 4 nucleotides ABID97_RS28890 and ABID97_RS28895 are separated by 18 nucleotides ABID97_RS28895 and ABID97_RS28900 are separated by 44 nucleotides
ABID97_RS28885: ABID97_RS28885 - tripartite tricarboxylate transporter substrate binding protein, at 695,730 to 696,701
_RS28885
ABID97_RS28890: ABID97_RS28890 - citryl-CoA lyase, at 696,698 to 697,504
_RS28890
ABID97_RS28895: ABID97_RS28895 - dioxygenase, at 697,523 to 698,440
_RS28895
ABID97_RS28900: ABID97_RS28900 - CoA transferase, at 698,485 to 699,642
_RS28900
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 695.724 kb on + strand at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 695.939 kb on - strand, within ABID97_RS28885 at 696.091 kb on + strand, within ABID97_RS28885 at 696.091 kb on + strand, within ABID97_RS28885 at 696.382 kb on + strand, within ABID97_RS28885 at 696.382 kb on + strand, within ABID97_RS28885 at 696.976 kb on - strand, within ABID97_RS28890 at 697.329 kb on - strand, within ABID97_RS28890 at 697.329 kb on - strand, within ABID97_RS28890 at 697.554 kb on + strand at 697.555 kb on - strand at 697.674 kb on + strand, within ABID97_RS28895 at 697.675 kb on - strand, within ABID97_RS28895 at 697.818 kb on + strand, within ABID97_RS28895 at 697.819 kb on - strand, within ABID97_RS28895
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 695,724 + -0.2 695,939 - ABID97_RS28885 0.22 -0.0 695,939 - ABID97_RS28885 0.22 +0.5 695,939 - ABID97_RS28885 0.22 -0.7 695,939 - ABID97_RS28885 0.22 +0.0 695,939 - ABID97_RS28885 0.22 -0.2 696,091 + ABID97_RS28885 0.37 -0.1 696,091 + ABID97_RS28885 0.37 -0.1 696,382 + ABID97_RS28885 0.67 -0.2 696,382 + ABID97_RS28885 0.67 -0.3 696,976 - ABID97_RS28890 0.34 +0.7 697,329 - ABID97_RS28890 0.78 -2.3 697,329 - ABID97_RS28890 0.78 +0.3 697,554 + -0.2 697,555 - -1.0 697,674 + ABID97_RS28895 0.16 +0.2 697,675 - ABID97_RS28895 0.17 -0.5 697,818 + ABID97_RS28895 0.32 -0.9 697,819 - ABID97_RS28895 0.32 +1.5
Or see this region's nucleotide sequence