Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28565

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28560 and ABID97_RS28565 are separated by 42 nucleotidesABID97_RS28565 and ABID97_RS28570 are separated by 20 nucleotides ABID97_RS28560: ABID97_RS28560 - aldehyde dehydrogenase family protein, at 631,312 to 632,793 _RS28560 ABID97_RS28565: ABID97_RS28565 - cupin domain-containing protein, at 632,836 to 633,555 _RS28565 ABID97_RS28570: ABID97_RS28570 - FAD-binding oxidoreductase, at 633,576 to 634,901 _RS28570 Position (kb) 632 633 634Strain fitness (log2 ratio) -1 0 1at 632.853 kb on - strandat 633.013 kb on + strand, within ABID97_RS28565at 633.399 kb on + strand, within ABID97_RS28565at 633.883 kb on - strand, within ABID97_RS28570

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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632,853 - +0.5
633,013 + ABID97_RS28565 0.25 +0.3
633,399 + ABID97_RS28565 0.78 +0.2
633,883 - ABID97_RS28570 0.23 +1.3

Or see this region's nucleotide sequence