Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27350 and ABID97_RS27355 are separated by 9 nucleotides ABID97_RS27355 and ABID97_RS27360 are separated by 26 nucleotides ABID97_RS27360 and ABID97_RS27365 are separated by 162 nucleotides
ABID97_RS27350: ABID97_RS27350 - glutathione S-transferase family protein, at 388,419 to 389,081
_RS27350
ABID97_RS27355: ABID97_RS27355 - RraA family protein, at 389,091 to 389,762
_RS27355
ABID97_RS27360: ABID97_RS27360 - aspartate transaminase, at 389,789 to 390,997
_RS27360
ABID97_RS27365: ABID97_RS27365 - nitrogen assimilation transcriptional regulator NAC, at 391,160 to 392,098
_RS27365
Position (kb) 389
390
391 Strain fitness (log2 ratio) -1
0
1 at 389.332 kb on + strand, within ABID97_RS27355 at 389.363 kb on - strand, within ABID97_RS27355 at 389.548 kb on + strand, within ABID97_RS27355 at 389.548 kb on + strand, within ABID97_RS27355 at 389.755 kb on + strand at 390.019 kb on - strand, within ABID97_RS27360 at 390.099 kb on + strand, within ABID97_RS27360 at 390.100 kb on - strand, within ABID97_RS27360 at 390.243 kb on + strand, within ABID97_RS27360 at 390.679 kb on - strand, within ABID97_RS27360 at 390.679 kb on - strand, within ABID97_RS27360 at 391.036 kb on - strand at 391.080 kb on + strand at 391.093 kb on + strand at 391.132 kb on - strand at 391.749 kb on - strand, within ABID97_RS27365
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 389,332 + ABID97_RS27355 0.36 +0.2 389,363 - ABID97_RS27355 0.40 -0.4 389,548 + ABID97_RS27355 0.68 -0.7 389,548 + ABID97_RS27355 0.68 -0.3 389,755 + +0.2 390,019 - ABID97_RS27360 0.19 -0.2 390,099 + ABID97_RS27360 0.26 -0.2 390,100 - ABID97_RS27360 0.26 +0.3 390,243 + ABID97_RS27360 0.38 +0.1 390,679 - ABID97_RS27360 0.74 +0.2 390,679 - ABID97_RS27360 0.74 +0.9 391,036 - +0.6 391,080 + +0.3 391,093 + -0.0 391,132 - -1.1 391,749 - ABID97_RS27365 0.63 -0.8
Or see this region's nucleotide sequence