Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26545

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26540 and ABID97_RS26545 are separated by 9 nucleotidesABID97_RS26545 and ABID97_RS26550 are separated by 17 nucleotides ABID97_RS26540: ABID97_RS26540 - dihydrolipoyl dehydrogenase, at 227,708 to 229,504 _RS26540 ABID97_RS26545: ABID97_RS26545 - alpha/beta fold hydrolase, at 229,514 to 230,308 _RS26545 ABID97_RS26550: ABID97_RS26550 - NADP-dependent malic enzyme, at 230,326 to 232,611 _RS26550 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1at 228.875 kb on + strand, within ABID97_RS26540at 229.694 kb on + strand, within ABID97_RS26545at 229.859 kb on + strand, within ABID97_RS26545

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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228,875 + ABID97_RS26540 0.65 -0.1
229,694 + ABID97_RS26545 0.23 -1.1
229,859 + ABID97_RS26545 0.43 -2.0

Or see this region's nucleotide sequence