Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25540

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25535 and ABID97_RS25540 are separated by 31 nucleotidesABID97_RS25540 and ABID97_RS25545 overlap by 4 nucleotides ABID97_RS25535: ABID97_RS25535 - sugar ABC transporter substrate-binding protein, at 25,090 to 26,211 _RS25535 ABID97_RS25540: ABID97_RS25540 - sugar ABC transporter ATP-binding protein, at 26,243 to 27,802 _RS25540 ABID97_RS25545: ABID97_RS25545 - ABC transporter permease, at 27,799 to 29,838 _RS25545 Position (kb) 26 27 28Strain fitness (log2 ratio) -1 0 1at 25.634 kb on - strand, within ABID97_RS25535at 25.765 kb on + strand, within ABID97_RS25535at 25.765 kb on + strand, within ABID97_RS25535at 25.765 kb on + strand, within ABID97_RS25535at 25.765 kb on + strand, within ABID97_RS25535at 25.960 kb on + strand, within ABID97_RS25535at 26.280 kb on + strandat 26.324 kb on + strandat 26.325 kb on - strandat 27.566 kb on + strand, within ABID97_RS25540at 27.567 kb on - strand, within ABID97_RS25540at 27.567 kb on - strand, within ABID97_RS25540at 27.614 kb on + strand, within ABID97_RS25540at 27.615 kb on - strand, within ABID97_RS25540at 28.093 kb on + strand, within ABID97_RS25545at 28.414 kb on + strand, within ABID97_RS25545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
25,634 - ABID97_RS25535 0.48 +0.9
25,765 + ABID97_RS25535 0.60 -0.0
25,765 + ABID97_RS25535 0.60 -0.1
25,765 + ABID97_RS25535 0.60 -1.7
25,765 + ABID97_RS25535 0.60 -0.2
25,960 + ABID97_RS25535 0.78 +0.5
26,280 + -0.9
26,324 + -0.2
26,325 - +0.2
27,566 + ABID97_RS25540 0.85 +0.5
27,567 - ABID97_RS25540 0.85 -0.1
27,567 - ABID97_RS25540 0.85 +0.3
27,614 + ABID97_RS25540 0.88 +0.8
27,615 - ABID97_RS25540 0.88 +0.7
28,093 + ABID97_RS25545 0.14 -1.6
28,414 + ABID97_RS25545 0.30 -0.2

Or see this region's nucleotide sequence