Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25115

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25105 and ABID97_RS25110 are separated by 110 nucleotidesABID97_RS25110 and ABID97_RS25115 are separated by 13 nucleotidesABID97_RS25115 and ABID97_RS25120 overlap by 8 nucleotidesABID97_RS25120 and ABID97_RS25125 are separated by 9 nucleotides ABID97_RS25105: ABID97_RS25105 - glyoxylate/hydroxypyruvate reductase A, at 5,200,158 to 5,201,078 _RS25105 ABID97_RS25110: ABID97_RS25110 - EthD family reductase, at 5,201,189 to 5,201,503 _RS25110 ABID97_RS25115: ABID97_RS25115 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 5,201,517 to 5,203,517 _RS25115 ABID97_RS25120: ABID97_RS25120 - DUF4126 domain-containing protein, at 5,203,510 to 5,204,181 _RS25120 ABID97_RS25125: ABID97_RS25125 - enoyl-CoA hydratase/isomerase family protein, at 5,204,191 to 5,204,982 _RS25125 Position (kb) 5201 5202 5203 5204Strain fitness (log2 ratio) -2 -1 0 1at 5200.714 kb on + strand, within ABID97_RS25105at 5200.715 kb on - strand, within ABID97_RS25105at 5200.715 kb on - strand, within ABID97_RS25105at 5200.747 kb on + strand, within ABID97_RS25105at 5200.792 kb on + strand, within ABID97_RS25105at 5200.793 kb on - strand, within ABID97_RS25105at 5201.090 kb on + strandat 5201.093 kb on + strandat 5201.132 kb on - strandat 5201.140 kb on + strandat 5201.140 kb on + strandat 5201.140 kb on + strandat 5201.141 kb on - strandat 5201.141 kb on - strandat 5201.210 kb on + strandat 5201.210 kb on + strandat 5201.210 kb on + strandat 5201.211 kb on - strandat 5201.211 kb on - strandat 5201.216 kb on + strandat 5201.306 kb on + strand, within ABID97_RS25110at 5201.306 kb on + strand, within ABID97_RS25110at 5201.306 kb on + strand, within ABID97_RS25110at 5201.307 kb on - strand, within ABID97_RS25110at 5201.357 kb on + strand, within ABID97_RS25110at 5201.357 kb on + strand, within ABID97_RS25110at 5201.357 kb on + strand, within ABID97_RS25110at 5201.358 kb on - strand, within ABID97_RS25110at 5201.358 kb on - strand, within ABID97_RS25110at 5201.358 kb on - strand, within ABID97_RS25110at 5201.453 kb on + strand, within ABID97_RS25110at 5201.453 kb on + strand, within ABID97_RS25110at 5201.454 kb on - strand, within ABID97_RS25110at 5201.454 kb on - strand, within ABID97_RS25110at 5201.959 kb on + strand, within ABID97_RS25115at 5201.960 kb on - strand, within ABID97_RS25115at 5202.346 kb on + strand, within ABID97_RS25115at 5202.716 kb on - strand, within ABID97_RS25115at 5202.716 kb on - strand, within ABID97_RS25115at 5202.850 kb on + strand, within ABID97_RS25115at 5202.850 kb on + strand, within ABID97_RS25115at 5202.851 kb on - strand, within ABID97_RS25115at 5202.851 kb on - strand, within ABID97_RS25115at 5202.855 kb on + strand, within ABID97_RS25115at 5202.856 kb on + strand, within ABID97_RS25115at 5202.856 kb on + strand, within ABID97_RS25115at 5202.856 kb on + strand, within ABID97_RS25115at 5202.856 kb on + strand, within ABID97_RS25115at 5202.856 kb on + strand, within ABID97_RS25115at 5202.856 kb on + strand, within ABID97_RS25115at 5202.857 kb on - strand, within ABID97_RS25115at 5202.857 kb on - strand, within ABID97_RS25115at 5202.857 kb on - strand, within ABID97_RS25115at 5202.913 kb on + strand, within ABID97_RS25115at 5202.914 kb on - strand, within ABID97_RS25115at 5202.914 kb on - strand, within ABID97_RS25115at 5203.273 kb on + strand, within ABID97_RS25115at 5203.339 kb on + strandat 5203.339 kb on + strandat 5203.340 kb on - strandat 5203.511 kb on + strandat 5203.922 kb on - strand, within ABID97_RS25120at 5204.109 kb on - strand, within ABID97_RS25120at 5204.109 kb on - strand, within ABID97_RS25120at 5204.495 kb on + strand, within ABID97_RS25125at 5204.496 kb on - strand, within ABID97_RS25125at 5204.496 kb on - strand, within ABID97_RS25125

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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5,200,714 + ABID97_RS25105 0.60 -0.4
5,200,715 - ABID97_RS25105 0.60 -0.1
5,200,715 - ABID97_RS25105 0.60 +0.5
5,200,747 + ABID97_RS25105 0.64 -0.1
5,200,792 + ABID97_RS25105 0.69 -0.4
5,200,793 - ABID97_RS25105 0.69 -0.3
5,201,090 + -0.0
5,201,093 + -0.3
5,201,132 - +0.1
5,201,140 + -0.3
5,201,140 + -1.1
5,201,140 + +0.1
5,201,141 - +0.6
5,201,141 - -1.0
5,201,210 + +0.1
5,201,210 + -0.4
5,201,210 + -0.4
5,201,211 - -0.4
5,201,211 - +0.8
5,201,216 + -0.1
5,201,306 + ABID97_RS25110 0.37 -0.5
5,201,306 + ABID97_RS25110 0.37 -0.1
5,201,306 + ABID97_RS25110 0.37 -0.3
5,201,307 - ABID97_RS25110 0.37 +0.4
5,201,357 + ABID97_RS25110 0.53 -0.4
5,201,357 + ABID97_RS25110 0.53 -0.4
5,201,357 + ABID97_RS25110 0.53 -0.5
5,201,358 - ABID97_RS25110 0.54 +0.7
5,201,358 - ABID97_RS25110 0.54 +1.5
5,201,358 - ABID97_RS25110 0.54 -0.1
5,201,453 + ABID97_RS25110 0.84 -0.4
5,201,453 + ABID97_RS25110 0.84 -0.1
5,201,454 - ABID97_RS25110 0.84 -0.3
5,201,454 - ABID97_RS25110 0.84 -0.4
5,201,959 + ABID97_RS25115 0.22 +0.3
5,201,960 - ABID97_RS25115 0.22 -0.3
5,202,346 + ABID97_RS25115 0.41 -0.5
5,202,716 - ABID97_RS25115 0.60 +0.1
5,202,716 - ABID97_RS25115 0.60 +0.4
5,202,850 + ABID97_RS25115 0.67 -0.3
5,202,850 + ABID97_RS25115 0.67 -1.2
5,202,851 - ABID97_RS25115 0.67 -0.9
5,202,851 - ABID97_RS25115 0.67 -0.5
5,202,855 + ABID97_RS25115 0.67 -1.5
5,202,856 + ABID97_RS25115 0.67 +0.3
5,202,856 + ABID97_RS25115 0.67 +1.3
5,202,856 + ABID97_RS25115 0.67 +0.9
5,202,856 + ABID97_RS25115 0.67 -0.1
5,202,856 + ABID97_RS25115 0.67 -0.6
5,202,856 + ABID97_RS25115 0.67 -0.2
5,202,857 - ABID97_RS25115 0.67 -0.2
5,202,857 - ABID97_RS25115 0.67 -1.3
5,202,857 - ABID97_RS25115 0.67 -0.1
5,202,913 + ABID97_RS25115 0.70 -0.1
5,202,914 - ABID97_RS25115 0.70 -1.0
5,202,914 - ABID97_RS25115 0.70 -0.2
5,203,273 + ABID97_RS25115 0.88 +0.4
5,203,339 + -0.2
5,203,339 + +0.1
5,203,340 - -0.2
5,203,511 + +0.1
5,203,922 - ABID97_RS25120 0.61 -0.4
5,204,109 - ABID97_RS25120 0.89 -0.2
5,204,109 - ABID97_RS25120 0.89 -0.0
5,204,495 + ABID97_RS25125 0.38 +0.5
5,204,496 - ABID97_RS25125 0.39 -1.9
5,204,496 - ABID97_RS25125 0.39 -1.0

Or see this region's nucleotide sequence