Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24935 and ABID97_RS24940 are separated by 12 nucleotides ABID97_RS24940 and ABID97_RS24945 overlap by 4 nucleotides ABID97_RS24945 and ABID97_RS24950 are separated by 132 nucleotides ABID97_RS24950 and ABID97_RS24955 overlap by 4 nucleotides
ABID97_RS24935: ABID97_RS24935 - class I SAM-dependent methyltransferase, at 5,163,904 to 5,164,527
_RS24935
ABID97_RS24940: ABID97_RS24940 - D-aminoacyl-tRNA deacylase, at 5,164,540 to 5,164,983
_RS24940
ABID97_RS24945: ABID97_RS24945 - cation diffusion facilitator family transporter, at 5,164,980 to 5,165,891
_RS24945
ABID97_RS24950: ABID97_RS24950 - FecR domain-containing protein, at 5,166,024 to 5,166,515
_RS24950
ABID97_RS24955: ABID97_RS24955 - OmpA family protein, at 5,166,512 to 5,167,126
_RS24955
Position (kb) 5164
5165
5166 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5164.225 kb on + strand, within ABID97_RS24935 at 5164.225 kb on + strand, within ABID97_RS24935 at 5164.225 kb on + strand, within ABID97_RS24935 at 5164.226 kb on - strand, within ABID97_RS24935 at 5164.372 kb on + strand, within ABID97_RS24935 at 5164.372 kb on + strand, within ABID97_RS24935 at 5164.661 kb on + strand, within ABID97_RS24940 at 5164.661 kb on + strand, within ABID97_RS24940 at 5164.662 kb on - strand, within ABID97_RS24940 at 5164.662 kb on - strand, within ABID97_RS24940 at 5164.667 kb on + strand, within ABID97_RS24940 at 5164.667 kb on + strand, within ABID97_RS24940 at 5164.667 kb on + strand, within ABID97_RS24940 at 5165.183 kb on + strand, within ABID97_RS24945 at 5165.183 kb on + strand, within ABID97_RS24945 at 5165.184 kb on - strand, within ABID97_RS24945 at 5165.184 kb on - strand, within ABID97_RS24945 at 5165.184 kb on - strand, within ABID97_RS24945 at 5165.665 kb on + strand, within ABID97_RS24945 at 5165.665 kb on + strand, within ABID97_RS24945 at 5165.665 kb on + strand, within ABID97_RS24945 at 5165.666 kb on - strand, within ABID97_RS24945 at 5165.666 kb on - strand, within ABID97_RS24945 at 5165.687 kb on - strand, within ABID97_RS24945 at 5165.810 kb on - strand at 5165.810 kb on - strand at 5165.970 kb on + strand at 5165.983 kb on + strand at 5165.986 kb on + strand at 5165.986 kb on + strand at 5165.986 kb on + strand at 5165.987 kb on - strand at 5165.987 kb on - strand at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.815 kb on + strand, within ABID97_RS24955 at 5166.816 kb on - strand, within ABID97_RS24955 at 5166.816 kb on - strand, within ABID97_RS24955 at 5166.816 kb on - strand, within ABID97_RS24955
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,164,225 + ABID97_RS24935 0.51 -0.2 5,164,225 + ABID97_RS24935 0.51 +0.1 5,164,225 + ABID97_RS24935 0.51 -0.1 5,164,226 - ABID97_RS24935 0.52 -0.4 5,164,372 + ABID97_RS24935 0.75 +0.1 5,164,372 + ABID97_RS24935 0.75 +0.4 5,164,661 + ABID97_RS24940 0.27 +0.1 5,164,661 + ABID97_RS24940 0.27 +0.1 5,164,662 - ABID97_RS24940 0.27 -0.0 5,164,662 - ABID97_RS24940 0.27 -0.0 5,164,667 + ABID97_RS24940 0.29 +0.2 5,164,667 + ABID97_RS24940 0.29 +0.2 5,164,667 + ABID97_RS24940 0.29 -0.3 5,165,183 + ABID97_RS24945 0.22 -0.6 5,165,183 + ABID97_RS24945 0.22 -1.4 5,165,184 - ABID97_RS24945 0.22 -1.0 5,165,184 - ABID97_RS24945 0.22 -1.4 5,165,184 - ABID97_RS24945 0.22 -1.5 5,165,665 + ABID97_RS24945 0.75 -3.1 5,165,665 + ABID97_RS24945 0.75 -1.6 5,165,665 + ABID97_RS24945 0.75 -1.6 5,165,666 - ABID97_RS24945 0.75 -3.5 5,165,666 - ABID97_RS24945 0.75 -1.3 5,165,687 - ABID97_RS24945 0.78 -1.5 5,165,810 - -1.2 5,165,810 - -1.8 5,165,970 + -1.0 5,165,983 + +1.5 5,165,986 + -0.8 5,165,986 + +0.4 5,165,986 + +0.6 5,165,987 - +0.8 5,165,987 - +0.1 5,166,815 + ABID97_RS24955 0.49 +0.0 5,166,815 + ABID97_RS24955 0.49 -0.3 5,166,815 + ABID97_RS24955 0.49 +0.1 5,166,815 + ABID97_RS24955 0.49 -0.3 5,166,815 + ABID97_RS24955 0.49 -0.2 5,166,815 + ABID97_RS24955 0.49 -0.0 5,166,815 + ABID97_RS24955 0.49 -0.8 5,166,816 - ABID97_RS24955 0.49 +0.5 5,166,816 - ABID97_RS24955 0.49 +0.3 5,166,816 - ABID97_RS24955 0.49 -0.1
Or see this region's nucleotide sequence