Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21325

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21315 and ABID97_RS21320 are separated by 4 nucleotidesABID97_RS21320 and ABID97_RS21325 are separated by 64 nucleotidesABID97_RS21325 and ABID97_RS21330 are separated by 6 nucleotides ABID97_RS21315: ABID97_RS21315 - superoxide dismutase family protein, at 4,398,987 to 4,399,529 _RS21315 ABID97_RS21320: ABID97_RS21320 - nucleotidyltransferase family protein, at 4,399,534 to 4,400,109 _RS21320 ABID97_RS21325: ABID97_RS21325 - pyridoxamine 5'-phosphate oxidase, at 4,400,174 to 4,400,830 _RS21325 ABID97_RS21330: ABID97_RS21330 - OmpA family protein, at 4,400,837 to 4,402,045 _RS21330 Position (kb) 4400 4401Strain fitness (log2 ratio) -1 0 1at 4400.118 kb on + strandat 4400.118 kb on + strandat 4400.119 kb on - strandat 4400.119 kb on - strandat 4401.282 kb on + strand, within ABID97_RS21330at 4401.283 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.474 kb on + strand, within ABID97_RS21330at 4401.475 kb on - strand, within ABID97_RS21330at 4401.675 kb on + strand, within ABID97_RS21330at 4401.675 kb on + strand, within ABID97_RS21330at 4401.676 kb on - strand, within ABID97_RS21330

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,400,118 + +0.1
4,400,118 + -0.1
4,400,119 - +0.8
4,400,119 - -0.0
4,401,282 + ABID97_RS21330 0.37 +0.2
4,401,283 - ABID97_RS21330 0.37 -0.1
4,401,295 - ABID97_RS21330 0.38 +0.4
4,401,295 - ABID97_RS21330 0.38 +0.1
4,401,295 - ABID97_RS21330 0.38 -0.1
4,401,295 - ABID97_RS21330 0.38 -0.2
4,401,474 + ABID97_RS21330 0.53 +1.4
4,401,475 - ABID97_RS21330 0.53 +0.3
4,401,675 + ABID97_RS21330 0.69 +0.4
4,401,675 + ABID97_RS21330 0.69 -0.1
4,401,676 - ABID97_RS21330 0.69 -0.8

Or see this region's nucleotide sequence