Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19530 and ABID97_RS19535 are separated by 80 nucleotides ABID97_RS19535 and ABID97_RS19540 are separated by 12 nucleotides ABID97_RS19540 and ABID97_RS19545 are separated by 57 nucleotides ABID97_RS19545 and ABID97_RS19550 overlap by 14 nucleotides
ABID97_RS19530: ABID97_RS19530 - haloacid dehalogenase-like hydrolase, at 4,032,105 to 4,033,373
_RS19530
ABID97_RS19535: ABID97_RS19535 - peroxidase-related enzyme, at 4,033,454 to 4,034,032
_RS19535
ABID97_RS19540: ABID97_RS19540 - phosphoethanolamine--lipid A transferase, at 4,034,045 to 4,035,796
_RS19540
ABID97_RS19545: ABID97_RS19545 - phosphatase PAP2 family protein, at 4,035,854 to 4,036,423
_RS19545
ABID97_RS19550: ABID97_RS19550 - phosphatase PAP2 family protein, at 4,036,410 to 4,037,087
_RS19550
Position (kb) 4034
4035
4036 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4033.104 kb on + strand, within ABID97_RS19530 at 4033.104 kb on + strand, within ABID97_RS19530 at 4033.105 kb on - strand, within ABID97_RS19530 at 4033.701 kb on - strand, within ABID97_RS19535 at 4033.701 kb on - strand, within ABID97_RS19535 at 4033.737 kb on - strand, within ABID97_RS19535 at 4034.031 kb on - strand at 4034.091 kb on + strand at 4034.158 kb on + strand at 4034.295 kb on + strand, within ABID97_RS19540 at 4034.328 kb on + strand, within ABID97_RS19540 at 4034.329 kb on - strand, within ABID97_RS19540 at 4034.421 kb on + strand, within ABID97_RS19540 at 4034.514 kb on + strand, within ABID97_RS19540 at 4034.515 kb on - strand, within ABID97_RS19540 at 4034.518 kb on - strand, within ABID97_RS19540 at 4034.518 kb on - strand, within ABID97_RS19540 at 4034.815 kb on - strand, within ABID97_RS19540 at 4035.138 kb on + strand, within ABID97_RS19540 at 4035.567 kb on + strand, within ABID97_RS19540 at 4035.637 kb on - strand at 4035.690 kb on - strand at 4035.690 kb on - strand at 4035.807 kb on + strand at 4035.894 kb on + strand at 4035.895 kb on - strand at 4036.173 kb on + strand, within ABID97_RS19545 at 4036.266 kb on + strand, within ABID97_RS19545 at 4036.715 kb on - strand, within ABID97_RS19550
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 4,033,104 + ABID97_RS19530 0.79 +0.8 4,033,104 + ABID97_RS19530 0.79 -2.2 4,033,105 - ABID97_RS19530 0.79 -0.8 4,033,701 - ABID97_RS19535 0.43 -0.4 4,033,701 - ABID97_RS19535 0.43 -0.4 4,033,737 - ABID97_RS19535 0.49 +0.2 4,034,031 - +0.8 4,034,091 + -1.5 4,034,158 + -1.9 4,034,295 + ABID97_RS19540 0.14 -2.7 4,034,328 + ABID97_RS19540 0.16 -1.7 4,034,329 - ABID97_RS19540 0.16 -2.9 4,034,421 + ABID97_RS19540 0.21 -1.9 4,034,514 + ABID97_RS19540 0.27 -1.5 4,034,515 - ABID97_RS19540 0.27 -0.7 4,034,518 - ABID97_RS19540 0.27 -2.1 4,034,518 - ABID97_RS19540 0.27 -3.0 4,034,815 - ABID97_RS19540 0.44 -0.6 4,035,138 + ABID97_RS19540 0.62 -0.5 4,035,567 + ABID97_RS19540 0.87 -1.4 4,035,637 - -2.8 4,035,690 - -1.3 4,035,690 - +0.1 4,035,807 + -1.0 4,035,894 + +1.6 4,035,895 - -0.1 4,036,173 + ABID97_RS19545 0.56 +0.0 4,036,266 + ABID97_RS19545 0.72 -0.1 4,036,715 - ABID97_RS19550 0.45 -0.6
Or see this region's nucleotide sequence