Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18560

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18550 and ABID97_RS18555 overlap by 4 nucleotidesABID97_RS18555 and ABID97_RS18560 are separated by 82 nucleotidesABID97_RS18560 and ABID97_RS18565 are separated by 167 nucleotidesABID97_RS18565 and ABID97_RS18570 are separated by 9 nucleotides ABID97_RS18550: ABID97_RS18550 - acyl-CoA thioesterase domain-containing protein, at 3,823,558 to 3,824,439 _RS18550 ABID97_RS18555: ABID97_RS18555 - NAD(P)H-dependent oxidoreductase, at 3,824,436 to 3,825,188 _RS18555 ABID97_RS18560: ABID97_RS18560 - FAD-dependent oxidoreductase, at 3,825,271 to 3,826,551 _RS18560 ABID97_RS18565: ABID97_RS18565 - TetR/AcrR family transcriptional regulator, at 3,826,719 to 3,827,342 _RS18565 ABID97_RS18570: ABID97_RS18570 - nitroreductase, at 3,827,352 to 3,828,053 _RS18570 Position (kb) 3825 3826 3827Strain fitness (log2 ratio) -1 0 1at 3824.618 kb on - strand, within ABID97_RS18555at 3824.618 kb on - strand, within ABID97_RS18555at 3824.766 kb on + strand, within ABID97_RS18555at 3825.169 kb on + strandat 3825.180 kb on + strandat 3825.189 kb on - strandat 3825.458 kb on + strand, within ABID97_RS18560at 3825.552 kb on - strand, within ABID97_RS18560at 3825.960 kb on - strand, within ABID97_RS18560at 3826.562 kb on - strandat 3826.989 kb on + strand, within ABID97_RS18565

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,824,618 - ABID97_RS18555 0.24 +0.7
3,824,618 - ABID97_RS18555 0.24 +0.8
3,824,766 + ABID97_RS18555 0.44 -1.6
3,825,169 + +0.3
3,825,180 + +1.0
3,825,189 - +0.4
3,825,458 + ABID97_RS18560 0.15 +0.6
3,825,552 - ABID97_RS18560 0.22 -0.2
3,825,960 - ABID97_RS18560 0.54 +0.6
3,826,562 - +1.7
3,826,989 + ABID97_RS18565 0.43 +0.3

Or see this region's nucleotide sequence