Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18550 and ABID97_RS18555 overlap by 4 nucleotides ABID97_RS18555 and ABID97_RS18560 are separated by 82 nucleotides ABID97_RS18560 and ABID97_RS18565 are separated by 167 nucleotides ABID97_RS18565 and ABID97_RS18570 are separated by 9 nucleotides
ABID97_RS18550: ABID97_RS18550 - acyl-CoA thioesterase domain-containing protein, at 3,823,558 to 3,824,439
_RS18550
ABID97_RS18555: ABID97_RS18555 - NAD(P)H-dependent oxidoreductase, at 3,824,436 to 3,825,188
_RS18555
ABID97_RS18560: ABID97_RS18560 - FAD-dependent oxidoreductase, at 3,825,271 to 3,826,551
_RS18560
ABID97_RS18565: ABID97_RS18565 - TetR/AcrR family transcriptional regulator, at 3,826,719 to 3,827,342
_RS18565
ABID97_RS18570: ABID97_RS18570 - nitroreductase, at 3,827,352 to 3,828,053
_RS18570
Position (kb)
3825
3826
3827 Strain fitness (log2 ratio)
-1
0
1 at 3824.618 kb on - strand, within ABID97_RS18555 at 3824.618 kb on - strand, within ABID97_RS18555 at 3824.766 kb on + strand, within ABID97_RS18555 at 3825.169 kb on + strand at 3825.180 kb on + strand at 3825.189 kb on - strand at 3825.458 kb on + strand, within ABID97_RS18560 at 3825.552 kb on - strand, within ABID97_RS18560 at 3825.960 kb on - strand, within ABID97_RS18560 at 3826.562 kb on - strand at 3826.989 kb on + strand, within ABID97_RS18565
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 3,824,618 - ABID97_RS18555 0.24 +0.7 3,824,618 - ABID97_RS18555 0.24 +0.8 3,824,766 + ABID97_RS18555 0.44 -1.6 3,825,169 + +0.3 3,825,180 + +1.0 3,825,189 - +0.4 3,825,458 + ABID97_RS18560 0.15 +0.6 3,825,552 - ABID97_RS18560 0.22 -0.2 3,825,960 - ABID97_RS18560 0.54 +0.6 3,826,562 - +1.7 3,826,989 + ABID97_RS18565 0.43 +0.3
Or see this region's nucleotide sequence