Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17295

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17285 and ABID97_RS17290 overlap by 4 nucleotidesABID97_RS17290 and ABID97_RS17295 overlap by 4 nucleotidesABID97_RS17295 and ABID97_RS17300 are separated by 319 nucleotidesABID97_RS17300 and ABID97_RS17305 are separated by 71 nucleotidesABID97_RS17305 and ABID97_RS17310 are separated by 7 nucleotides ABID97_RS17285: ABID97_RS17285 - transcription-repair coupling factor, at 3,569,891 to 3,573,373 _RS17285 ABID97_RS17290: ABID97_RS17290 - phosphoserine phosphatase SerB, at 3,573,370 to 3,574,080 _RS17290 ABID97_RS17295: ABID97_RS17295 - Ldh family oxidoreductase, at 3,574,077 to 3,575,144 _RS17295 ABID97_RS17300: ABID97_RS17300 - DUF6172 family protein, at 3,575,464 to 3,575,790 _RS17300 ABID97_RS17305: ABID97_RS17305 - hypothetical protein, at 3,575,862 to 3,576,089 _RS17305 ABID97_RS17310: ABID97_RS17310 - PLP-dependent aminotransferase family protein, at 3,576,097 to 3,577,284 _RS17310 Position (kb) 3574 3575 3576Strain fitness (log2 ratio) -1 0 1at 3574.101 kb on + strandat 3574.101 kb on + strandat 3574.102 kb on - strandat 3574.248 kb on + strand, within ABID97_RS17295at 3574.248 kb on + strand, within ABID97_RS17295at 3574.249 kb on - strand, within ABID97_RS17295at 3574.461 kb on + strand, within ABID97_RS17295at 3574.461 kb on + strand, within ABID97_RS17295at 3575.142 kb on + strandat 3575.162 kb on - strandat 3575.549 kb on + strand, within ABID97_RS17300at 3575.550 kb on - strand, within ABID97_RS17300at 3575.708 kb on + strand, within ABID97_RS17300at 3575.708 kb on + strand, within ABID97_RS17300at 3575.709 kb on - strand, within ABID97_RS17300at 3575.801 kb on - strandat 3575.827 kb on + strandat 3575.827 kb on + strandat 3576.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,574,101 + -0.3
3,574,101 + +1.0
3,574,102 - -0.4
3,574,248 + ABID97_RS17295 0.16 -0.3
3,574,248 + ABID97_RS17295 0.16 -0.0
3,574,249 - ABID97_RS17295 0.16 -0.6
3,574,461 + ABID97_RS17295 0.36 +0.6
3,574,461 + ABID97_RS17295 0.36 +0.3
3,575,142 + -0.5
3,575,162 - -0.6
3,575,549 + ABID97_RS17300 0.26 -0.3
3,575,550 - ABID97_RS17300 0.26 -0.0
3,575,708 + ABID97_RS17300 0.75 -0.0
3,575,708 + ABID97_RS17300 0.75 -0.5
3,575,709 - ABID97_RS17300 0.75 -0.1
3,575,801 - -0.4
3,575,827 + -0.8
3,575,827 + -0.1
3,576,098 + +0.0

Or see this region's nucleotide sequence