Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15620

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15615 and ABID97_RS15620 are separated by 14 nucleotidesABID97_RS15620 and ABID97_RS15625 are separated by 22 nucleotides ABID97_RS15615: ABID97_RS15615 - chromosome segregation protein SMC, at 3,226,018 to 3,229,533 _RS15615 ABID97_RS15620: ABID97_RS15620 - cell division protein ZipA C-terminal FtsZ-binding domain-containing protein, at 3,229,548 to 3,230,648 _RS15620 ABID97_RS15625: ABID97_RS15625 - NAD-dependent DNA ligase LigA, at 3,230,671 to 3,232,755 _RS15625 Position (kb) 3229 3230 3231Strain fitness (log2 ratio) -2 -1 0 1at 3229.531 kb on + strandat 3229.532 kb on - strandat 3229.611 kb on + strandat 3229.612 kb on - strandat 3229.612 kb on - strandat 3230.008 kb on - strand, within ABID97_RS15620at 3230.247 kb on + strand, within ABID97_RS15620at 3230.248 kb on - strand, within ABID97_RS15620at 3230.248 kb on - strand, within ABID97_RS15620at 3230.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,229,531 + -0.9
3,229,532 - +0.4
3,229,611 + -1.2
3,229,612 - +0.2
3,229,612 - -0.6
3,230,008 - ABID97_RS15620 0.42 -1.6
3,230,247 + ABID97_RS15620 0.63 -2.0
3,230,248 - ABID97_RS15620 0.64 -1.2
3,230,248 - ABID97_RS15620 0.64 -1.6
3,230,584 - -0.2

Or see this region's nucleotide sequence