Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12880

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12875 and ABID97_RS12880 are separated by 77 nucleotidesABID97_RS12880 and ABID97_RS12885 are separated by 51 nucleotides ABID97_RS12875: ABID97_RS12875 - class 1 fructose-bisphosphatase, at 2,667,351 to 2,668,424 _RS12875 ABID97_RS12880: ABID97_RS12880 - phosphoribulokinase, at 2,668,502 to 2,669,380 _RS12880 ABID97_RS12885: ABID97_RS12885 - transketolase, at 2,669,432 to 2,671,471 _RS12885 Position (kb) 2668 2669 2670Strain fitness (log2 ratio) -1 0 1 2at 2667.649 kb on - strand, within ABID97_RS12875at 2667.682 kb on - strand, within ABID97_RS12875at 2668.195 kb on - strand, within ABID97_RS12875at 2668.375 kb on - strandat 2668.375 kb on - strandat 2668.887 kb on - strand, within ABID97_RS12880at 2669.069 kb on + strand, within ABID97_RS12880at 2669.078 kb on + strand, within ABID97_RS12880at 2669.078 kb on + strand, within ABID97_RS12880at 2669.661 kb on - strand, within ABID97_RS12885

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,667,649 - ABID97_RS12875 0.28 +0.2
2,667,682 - ABID97_RS12875 0.31 -0.2
2,668,195 - ABID97_RS12875 0.79 +2.1
2,668,375 - -0.0
2,668,375 - +0.0
2,668,887 - ABID97_RS12880 0.44 -0.8
2,669,069 + ABID97_RS12880 0.65 +0.3
2,669,078 + ABID97_RS12880 0.66 -0.1
2,669,078 + ABID97_RS12880 0.66 -0.3
2,669,661 - ABID97_RS12885 0.11 +2.7

Or see this region's nucleotide sequence