Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11330

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11320 and ABID97_RS11325 are separated by 11 nucleotidesABID97_RS11325 and ABID97_RS11330 are separated by 20 nucleotidesABID97_RS11330 and ABID97_RS11335 are separated by 3 nucleotides ABID97_RS11320: ABID97_RS11320 - ABC transporter permease subunit, at 2,336,941 to 2,337,798 _RS11320 ABID97_RS11325: ABID97_RS11325 - ATP-binding cassette domain-containing protein, at 2,337,810 to 2,338,595 _RS11325 ABID97_RS11330: ABID97_RS11330 - enoyl-CoA hydratase-related protein, at 2,338,616 to 2,339,410 _RS11330 ABID97_RS11335: ABID97_RS11335 - thiolase family protein, at 2,339,414 to 2,340,580 _RS11335 Position (kb) 2338 2339 2340Strain fitness (log2 ratio) -1 0 1at 2337.968 kb on + strand, within ABID97_RS11325at 2337.968 kb on + strand, within ABID97_RS11325at 2337.968 kb on + strand, within ABID97_RS11325at 2338.594 kb on - strandat 2338.623 kb on - strandat 2339.409 kb on - strandat 2339.609 kb on + strand, within ABID97_RS11335at 2339.610 kb on - strand, within ABID97_RS11335at 2339.651 kb on + strand, within ABID97_RS11335

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,337,968 + ABID97_RS11325 0.20 -0.0
2,337,968 + ABID97_RS11325 0.20 +0.4
2,337,968 + ABID97_RS11325 0.20 -0.7
2,338,594 - -0.3
2,338,623 - +0.1
2,339,409 - -1.5
2,339,609 + ABID97_RS11335 0.17 -0.2
2,339,610 - ABID97_RS11335 0.17 -1.5
2,339,651 + ABID97_RS11335 0.20 -1.1

Or see this region's nucleotide sequence