Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09485

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09475 and ABID97_RS09480 are separated by 209 nucleotidesABID97_RS09480 and ABID97_RS09485 are separated by 145 nucleotidesABID97_RS09485 and ABID97_RS09490 overlap by 11 nucleotidesABID97_RS09490 and ABID97_RS09495 are separated by 54 nucleotidesABID97_RS09495 and ABID97_RS09500 are separated by 71 nucleotides ABID97_RS09475: ABID97_RS09475 - TRAP transporter substrate-binding protein, at 1,990,783 to 1,991,751 _RS09475 ABID97_RS09480: ABID97_RS09480 - helix-hairpin-helix domain-containing protein, at 1,991,961 to 1,992,326 _RS09480 ABID97_RS09485: ABID97_RS09485 - lipopolysaccharide assembly protein LapB, at 1,992,472 to 1,993,650 _RS09485 ABID97_RS09490: ABID97_RS09490 - LapA family protein, at 1,993,640 to 1,993,981 _RS09490 ABID97_RS09495: ABID97_RS09495 - integration host factor subunit beta, at 1,994,036 to 1,994,362 _RS09495 ABID97_RS09500: ABID97_RS09500 - 30S ribosomal protein S1, at 1,994,434 to 1,996,122 _RS09500 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -1 0 1 2at 1991.483 kb on + strand, within ABID97_RS09475at 1991.483 kb on + strand, within ABID97_RS09475at 1991.649 kb on - strand, within ABID97_RS09475at 1991.793 kb on + strandat 1991.793 kb on + strandat 1991.793 kb on + strandat 1991.793 kb on + strandat 1991.794 kb on - strandat 1993.668 kb on - strandat 1993.875 kb on + strand, within ABID97_RS09490at 1993.894 kb on - strand, within ABID97_RS09490at 1994.008 kb on + strandat 1994.008 kb on + strandat 1994.009 kb on - strandat 1994.362 kb on + strandat 1994.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,991,483 + ABID97_RS09475 0.72 -0.3
1,991,483 + ABID97_RS09475 0.72 +0.5
1,991,649 - ABID97_RS09475 0.89 -0.4
1,991,793 + -0.4
1,991,793 + -0.2
1,991,793 + +0.0
1,991,793 + +0.9
1,991,794 - -1.4
1,993,668 - +0.6
1,993,875 + ABID97_RS09490 0.69 +1.0
1,993,894 - ABID97_RS09490 0.74 +2.4
1,994,008 + -0.3
1,994,008 + -0.5
1,994,009 - +0.4
1,994,362 + +0.6
1,994,436 - +0.2

Or see this region's nucleotide sequence