Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08350 and ABID97_RS08355 are separated by 8 nucleotides ABID97_RS08355 and ABID97_RS08360 are separated by 31 nucleotides ABID97_RS08360 and ABID97_RS08365 are separated by 17 nucleotides
ABID97_RS08350: ABID97_RS08350 - translation elongation factor 4, at 1,755,190 to 1,757,001
_RS08350
ABID97_RS08355: ABID97_RS08355 - signal peptidase I, at 1,757,010 to 1,757,975
_RS08355
ABID97_RS08360: ABID97_RS08360 - DUF4845 domain-containing protein, at 1,758,007 to 1,758,375
_RS08360
ABID97_RS08365: ABID97_RS08365 - ribonuclease III, at 1,758,393 to 1,759,079
_RS08365
Position (kb) 1757
1758 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1756.324 kb on + strand, within ABID97_RS08350 at 1756.435 kb on + strand, within ABID97_RS08350 at 1756.435 kb on + strand, within ABID97_RS08350 at 1756.435 kb on + strand, within ABID97_RS08350 at 1756.435 kb on + strand, within ABID97_RS08350 at 1756.435 kb on + strand, within ABID97_RS08350 at 1756.435 kb on + strand, within ABID97_RS08350 at 1756.436 kb on - strand, within ABID97_RS08350 at 1756.436 kb on - strand, within ABID97_RS08350 at 1756.436 kb on - strand, within ABID97_RS08350 at 1756.436 kb on - strand, within ABID97_RS08350 at 1756.451 kb on - strand, within ABID97_RS08350 at 1756.451 kb on - strand, within ABID97_RS08350 at 1756.451 kb on - strand, within ABID97_RS08350 at 1756.510 kb on + strand, within ABID97_RS08350 at 1756.537 kb on + strand, within ABID97_RS08350 at 1756.538 kb on - strand, within ABID97_RS08350 at 1756.603 kb on + strand, within ABID97_RS08350 at 1756.603 kb on + strand, within ABID97_RS08350 at 1756.619 kb on - strand, within ABID97_RS08350 at 1756.633 kb on + strand, within ABID97_RS08350 at 1758.143 kb on - strand, within ABID97_RS08360 at 1758.301 kb on + strand, within ABID97_RS08360 at 1758.301 kb on + strand, within ABID97_RS08360 at 1758.301 kb on + strand, within ABID97_RS08360 at 1758.302 kb on - strand, within ABID97_RS08360 at 1758.302 kb on - strand, within ABID97_RS08360 at 1758.302 kb on - strand, within ABID97_RS08360 at 1758.307 kb on + strand, within ABID97_RS08360 at 1758.355 kb on + strand at 1758.355 kb on + strand at 1758.355 kb on + strand at 1758.356 kb on - strand at 1758.356 kb on - strand at 1758.558 kb on + strand, within ABID97_RS08365 at 1758.558 kb on + strand, within ABID97_RS08365 at 1758.558 kb on + strand, within ABID97_RS08365 at 1758.559 kb on - strand, within ABID97_RS08365 at 1758.808 kb on - strand, within ABID97_RS08365 at 1758.909 kb on + strand, within ABID97_RS08365 at 1758.909 kb on + strand, within ABID97_RS08365
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,756,324 + ABID97_RS08350 0.63 +0.7 1,756,435 + ABID97_RS08350 0.69 -1.0 1,756,435 + ABID97_RS08350 0.69 -1.6 1,756,435 + ABID97_RS08350 0.69 -0.5 1,756,435 + ABID97_RS08350 0.69 -0.2 1,756,435 + ABID97_RS08350 0.69 +0.3 1,756,435 + ABID97_RS08350 0.69 -2.1 1,756,436 - ABID97_RS08350 0.69 +0.3 1,756,436 - ABID97_RS08350 0.69 -0.9 1,756,436 - ABID97_RS08350 0.69 +0.7 1,756,436 - ABID97_RS08350 0.69 -2.2 1,756,451 - ABID97_RS08350 0.70 -0.5 1,756,451 - ABID97_RS08350 0.70 -0.1 1,756,451 - ABID97_RS08350 0.70 +0.3 1,756,510 + ABID97_RS08350 0.73 -0.6 1,756,537 + ABID97_RS08350 0.74 -0.3 1,756,538 - ABID97_RS08350 0.74 -0.9 1,756,603 + ABID97_RS08350 0.78 -0.8 1,756,603 + ABID97_RS08350 0.78 +0.5 1,756,619 - ABID97_RS08350 0.79 -0.8 1,756,633 + ABID97_RS08350 0.80 +0.6 1,758,143 - ABID97_RS08360 0.37 -1.9 1,758,301 + ABID97_RS08360 0.80 -1.1 1,758,301 + ABID97_RS08360 0.80 -1.4 1,758,301 + ABID97_RS08360 0.80 -0.2 1,758,302 - ABID97_RS08360 0.80 -2.1 1,758,302 - ABID97_RS08360 0.80 -1.6 1,758,302 - ABID97_RS08360 0.80 -2.6 1,758,307 + ABID97_RS08360 0.81 -2.8 1,758,355 + -2.4 1,758,355 + -2.0 1,758,355 + -0.6 1,758,356 - -0.7 1,758,356 - -1.8 1,758,558 + ABID97_RS08365 0.24 -1.1 1,758,558 + ABID97_RS08365 0.24 +0.7 1,758,558 + ABID97_RS08365 0.24 -3.0 1,758,559 - ABID97_RS08365 0.24 -0.1 1,758,808 - ABID97_RS08365 0.60 -0.8 1,758,909 + ABID97_RS08365 0.75 +0.1 1,758,909 + ABID97_RS08365 0.75 -1.6
Or see this region's nucleotide sequence