Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08225

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08220 and ABID97_RS08225 are separated by 104 nucleotidesABID97_RS08225 and ABID97_RS08230 are separated by 19 nucleotidesABID97_RS08230 and ABID97_RS08235 overlap by 4 nucleotides ABID97_RS08220: ABID97_RS08220 - phosphoenolpyruvate carboxylase, at 1,726,793 to 1,729,639 _RS08220 ABID97_RS08225: ABID97_RS08225 - hydroxymethylbilane synthase, at 1,729,744 to 1,730,649 _RS08225 ABID97_RS08230: ABID97_RS08230 - uroporphyrinogen-III synthase, at 1,730,669 to 1,731,457 _RS08230 ABID97_RS08235: ABID97_RS08235 - uroporphyrinogen-III C-methyltransferase, at 1,731,454 to 1,732,545 _RS08235 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1728.766 kb on - strand, within ABID97_RS08220at 1728.894 kb on + strand, within ABID97_RS08220at 1728.895 kb on - strand, within ABID97_RS08220at 1728.930 kb on + strand, within ABID97_RS08220at 1728.930 kb on + strand, within ABID97_RS08220at 1728.931 kb on - strand, within ABID97_RS08220at 1728.933 kb on + strand, within ABID97_RS08220at 1728.933 kb on + strand, within ABID97_RS08220at 1728.933 kb on + strand, within ABID97_RS08220at 1728.934 kb on - strand, within ABID97_RS08220at 1729.081 kb on - strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.204 kb on - strand, within ABID97_RS08220at 1729.509 kb on + strandat 1729.510 kb on - strandat 1729.510 kb on - strandat 1729.701 kb on + strandat 1729.702 kb on - strandat 1729.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,728,766 - ABID97_RS08220 0.69 -1.3
1,728,894 + ABID97_RS08220 0.74 -1.1
1,728,895 - ABID97_RS08220 0.74 -1.8
1,728,930 + ABID97_RS08220 0.75 -1.5
1,728,930 + ABID97_RS08220 0.75 -3.8
1,728,931 - ABID97_RS08220 0.75 -1.8
1,728,933 + ABID97_RS08220 0.75 -1.5
1,728,933 + ABID97_RS08220 0.75 +0.7
1,728,933 + ABID97_RS08220 0.75 +1.7
1,728,934 - ABID97_RS08220 0.75 -1.3
1,729,081 - ABID97_RS08220 0.80 -1.3
1,729,203 + ABID97_RS08220 0.85 -1.5
1,729,203 + ABID97_RS08220 0.85 -2.8
1,729,203 + ABID97_RS08220 0.85 -0.4
1,729,203 + ABID97_RS08220 0.85 -2.7
1,729,203 + ABID97_RS08220 0.85 -3.0
1,729,204 - ABID97_RS08220 0.85 -2.0
1,729,509 + -1.1
1,729,510 - -1.8
1,729,510 - -1.7
1,729,701 + -0.0
1,729,702 - +3.2
1,729,752 + -0.7

Or see this region's nucleotide sequence