Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08220 and ABID97_RS08225 are separated by 104 nucleotides ABID97_RS08225 and ABID97_RS08230 are separated by 19 nucleotides ABID97_RS08230 and ABID97_RS08235 overlap by 4 nucleotides
ABID97_RS08220: ABID97_RS08220 - phosphoenolpyruvate carboxylase, at 1,726,793 to 1,729,639
_RS08220
ABID97_RS08225: ABID97_RS08225 - hydroxymethylbilane synthase, at 1,729,744 to 1,730,649
_RS08225
ABID97_RS08230: ABID97_RS08230 - uroporphyrinogen-III synthase, at 1,730,669 to 1,731,457
_RS08230
ABID97_RS08235: ABID97_RS08235 - uroporphyrinogen-III C-methyltransferase, at 1,731,454 to 1,732,545
_RS08235
Position (kb)
1729
1730
1731 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1728.766 kb on - strand, within ABID97_RS08220 at 1728.894 kb on + strand, within ABID97_RS08220 at 1728.895 kb on - strand, within ABID97_RS08220 at 1728.930 kb on + strand, within ABID97_RS08220 at 1728.930 kb on + strand, within ABID97_RS08220 at 1728.931 kb on - strand, within ABID97_RS08220 at 1728.933 kb on + strand, within ABID97_RS08220 at 1728.933 kb on + strand, within ABID97_RS08220 at 1728.933 kb on + strand, within ABID97_RS08220 at 1728.934 kb on - strand, within ABID97_RS08220 at 1729.081 kb on - strand, within ABID97_RS08220 at 1729.203 kb on + strand, within ABID97_RS08220 at 1729.203 kb on + strand, within ABID97_RS08220 at 1729.203 kb on + strand, within ABID97_RS08220 at 1729.203 kb on + strand, within ABID97_RS08220 at 1729.203 kb on + strand, within ABID97_RS08220 at 1729.204 kb on - strand, within ABID97_RS08220 at 1729.509 kb on + strand at 1729.510 kb on - strand at 1729.510 kb on - strand at 1729.701 kb on + strand at 1729.702 kb on - strand at 1729.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,728,766 - ABID97_RS08220 0.69 -1.3 1,728,894 + ABID97_RS08220 0.74 -1.1 1,728,895 - ABID97_RS08220 0.74 -1.8 1,728,930 + ABID97_RS08220 0.75 -1.5 1,728,930 + ABID97_RS08220 0.75 -3.8 1,728,931 - ABID97_RS08220 0.75 -1.8 1,728,933 + ABID97_RS08220 0.75 -1.5 1,728,933 + ABID97_RS08220 0.75 +0.7 1,728,933 + ABID97_RS08220 0.75 +1.7 1,728,934 - ABID97_RS08220 0.75 -1.3 1,729,081 - ABID97_RS08220 0.80 -1.3 1,729,203 + ABID97_RS08220 0.85 -1.5 1,729,203 + ABID97_RS08220 0.85 -2.8 1,729,203 + ABID97_RS08220 0.85 -0.4 1,729,203 + ABID97_RS08220 0.85 -2.7 1,729,203 + ABID97_RS08220 0.85 -3.0 1,729,204 - ABID97_RS08220 0.85 -2.0 1,729,509 + -1.1 1,729,510 - -1.8 1,729,510 - -1.7 1,729,701 + -0.0 1,729,702 - +3.2 1,729,752 + -0.7
Or see this region's nucleotide sequence