Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08020 and ABID97_RS08025 are separated by 85 nucleotides ABID97_RS08025 and ABID97_RS08030 are separated by 82 nucleotides ABID97_RS08030 and ABID97_RS08035 are separated by 28 nucleotides ABID97_RS08035 and ABID97_RS08040 are separated by 209 nucleotides
ABID97_RS08020: ABID97_RS08020 - helix-turn-helix domain-containing protein, at 1,685,991 to 1,686,593
_RS08020
ABID97_RS08025: ABID97_RS08025 - nuclear transport factor 2 family protein, at 1,686,679 to 1,687,101
_RS08025
ABID97_RS08030: ABID97_RS08030 - cyanase, at 1,687,184 to 1,687,627
_RS08030
ABID97_RS08035: ABID97_RS08035 - SDR family oxidoreductase, at 1,687,656 to 1,688,408
_RS08035
ABID97_RS08040: ABID97_RS08040 - DUF4329 domain-containing protein, at 1,688,618 to 1,689,136
_RS08040
Position (kb) 1687
1688 Strain fitness (log2 ratio) -1
0
1
2 at 1686.220 kb on - strand, within ABID97_RS08020 at 1686.460 kb on + strand, within ABID97_RS08020 at 1686.461 kb on - strand, within ABID97_RS08020 at 1686.532 kb on + strand, within ABID97_RS08020 at 1686.532 kb on + strand, within ABID97_RS08020 at 1686.532 kb on + strand, within ABID97_RS08020 at 1686.533 kb on - strand at 1686.605 kb on - strand at 1686.790 kb on + strand, within ABID97_RS08025 at 1686.850 kb on + strand, within ABID97_RS08025 at 1686.950 kb on - strand, within ABID97_RS08025 at 1687.397 kb on + strand, within ABID97_RS08030 at 1687.397 kb on + strand, within ABID97_RS08030 at 1687.398 kb on - strand, within ABID97_RS08030 at 1687.398 kb on - strand, within ABID97_RS08030 at 1687.442 kb on + strand, within ABID97_RS08030 at 1687.442 kb on + strand, within ABID97_RS08030 at 1687.443 kb on - strand, within ABID97_RS08030 at 1687.451 kb on + strand, within ABID97_RS08030 at 1687.452 kb on - strand, within ABID97_RS08030 at 1687.946 kb on - strand, within ABID97_RS08035 at 1688.212 kb on + strand, within ABID97_RS08035 at 1688.567 kb on + strand at 1688.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,686,220 - ABID97_RS08020 0.38 +1.3 1,686,460 + ABID97_RS08020 0.78 +0.2 1,686,461 - ABID97_RS08020 0.78 +0.0 1,686,532 + ABID97_RS08020 0.90 -0.1 1,686,532 + ABID97_RS08020 0.90 +0.2 1,686,532 + ABID97_RS08020 0.90 +0.4 1,686,533 - +0.0 1,686,605 - -0.2 1,686,790 + ABID97_RS08025 0.26 +0.5 1,686,850 + ABID97_RS08025 0.40 +2.3 1,686,950 - ABID97_RS08025 0.64 +0.3 1,687,397 + ABID97_RS08030 0.48 +0.1 1,687,397 + ABID97_RS08030 0.48 +0.1 1,687,398 - ABID97_RS08030 0.48 +0.2 1,687,398 - ABID97_RS08030 0.48 -0.5 1,687,442 + ABID97_RS08030 0.58 -0.0 1,687,442 + ABID97_RS08030 0.58 -0.2 1,687,443 - ABID97_RS08030 0.58 +0.0 1,687,451 + ABID97_RS08030 0.60 -0.1 1,687,452 - ABID97_RS08030 0.60 +0.2 1,687,946 - ABID97_RS08035 0.39 +0.3 1,688,212 + ABID97_RS08035 0.74 -0.5 1,688,567 + +0.9 1,688,568 - -1.3
Or see this region's nucleotide sequence