Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07945

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07940 and ABID97_RS07945 are separated by 5 nucleotidesABID97_RS07945 and ABID97_RS07950 are separated by 105 nucleotides ABID97_RS07940: ABID97_RS07940 - acyl-CoA dehydrogenase family protein, at 1,667,833 to 1,668,996 _RS07940 ABID97_RS07945: ABID97_RS07945 - citryl-CoA lyase, at 1,669,002 to 1,669,787 _RS07945 ABID97_RS07950: ABID97_RS07950 - acyl-CoA dehydrogenase, at 1,669,893 to 1,672,220 _RS07950 Position (kb) 1669 1670Strain fitness (log2 ratio) -1 0 1 2 3at 1668.026 kb on + strand, within ABID97_RS07940at 1668.026 kb on + strand, within ABID97_RS07940at 1668.287 kb on + strand, within ABID97_RS07940at 1668.287 kb on + strand, within ABID97_RS07940at 1668.287 kb on + strand, within ABID97_RS07940at 1668.675 kb on - strand, within ABID97_RS07940at 1668.725 kb on + strand, within ABID97_RS07940at 1668.725 kb on + strand, within ABID97_RS07940at 1668.725 kb on + strand, within ABID97_RS07940at 1668.726 kb on - strand, within ABID97_RS07940at 1668.726 kb on - strand, within ABID97_RS07940at 1668.726 kb on - strand, within ABID97_RS07940at 1669.256 kb on - strand, within ABID97_RS07945at 1669.441 kb on + strand, within ABID97_RS07945at 1669.441 kb on + strand, within ABID97_RS07945at 1669.543 kb on + strand, within ABID97_RS07945at 1669.544 kb on - strand, within ABID97_RS07945at 1669.781 kb on + strandat 1669.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,668,026 + ABID97_RS07940 0.17 -0.1
1,668,026 + ABID97_RS07940 0.17 -0.1
1,668,287 + ABID97_RS07940 0.39 -0.3
1,668,287 + ABID97_RS07940 0.39 +0.1
1,668,287 + ABID97_RS07940 0.39 -0.3
1,668,675 - ABID97_RS07940 0.72 +0.5
1,668,725 + ABID97_RS07940 0.77 -0.2
1,668,725 + ABID97_RS07940 0.77 -0.2
1,668,725 + ABID97_RS07940 0.77 -0.5
1,668,726 - ABID97_RS07940 0.77 -0.1
1,668,726 - ABID97_RS07940 0.77 -0.4
1,668,726 - ABID97_RS07940 0.77 -0.5
1,669,256 - ABID97_RS07945 0.32 +0.4
1,669,441 + ABID97_RS07945 0.56 +0.3
1,669,441 + ABID97_RS07945 0.56 +2.5
1,669,543 + ABID97_RS07945 0.69 -0.4
1,669,544 - ABID97_RS07945 0.69 +3.0
1,669,781 + -0.4
1,669,798 + +0.0

Or see this region's nucleotide sequence