Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06540 and ABID97_RS06545 are separated by 49 nucleotides ABID97_RS06545 and ABID97_RS06550 overlap by 28 nucleotides ABID97_RS06550 and ABID97_RS06555 are separated by 173 nucleotides ABID97_RS06555 and ABID97_RS06560 are separated by 114 nucleotides
ABID97_RS06540: ABID97_RS06540 - DUF2905 domain-containing protein, at 1,383,617 to 1,383,811
_RS06540
ABID97_RS06545: ABID97_RS06545 - ROK family protein, at 1,383,861 to 1,384,787
_RS06545
ABID97_RS06550: ABID97_RS06550 - PLP-dependent aminotransferase family protein, at 1,384,760 to 1,386,283
_RS06550
ABID97_RS06555: ABID97_RS06555 - hypothetical protein, at 1,386,457 to 1,386,810
_RS06555
ABID97_RS06560: ABID97_RS06560 - IS481 family transposase, at 1,386,925 to 1,387,875
_RS06560
Position (kb) 1384
1385
1386
1387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1383.809 kb on + strand at 1383.810 kb on - strand at 1384.296 kb on + strand, within ABID97_RS06545 at 1384.296 kb on + strand, within ABID97_RS06545 at 1384.296 kb on + strand, within ABID97_RS06545 at 1384.297 kb on - strand, within ABID97_RS06545 at 1384.297 kb on - strand, within ABID97_RS06545 at 1384.297 kb on - strand, within ABID97_RS06545 at 1384.587 kb on + strand, within ABID97_RS06545 at 1384.587 kb on + strand, within ABID97_RS06545 at 1384.587 kb on + strand, within ABID97_RS06545 at 1384.588 kb on - strand, within ABID97_RS06545 at 1384.588 kb on - strand, within ABID97_RS06545 at 1384.588 kb on - strand, within ABID97_RS06545 at 1384.588 kb on - strand, within ABID97_RS06545 at 1385.175 kb on + strand, within ABID97_RS06550 at 1385.176 kb on - strand, within ABID97_RS06550 at 1385.409 kb on + strand, within ABID97_RS06550 at 1385.409 kb on + strand, within ABID97_RS06550 at 1385.410 kb on - strand, within ABID97_RS06550 at 1385.410 kb on - strand, within ABID97_RS06550 at 1385.410 kb on - strand, within ABID97_RS06550 at 1385.544 kb on + strand, within ABID97_RS06550 at 1385.544 kb on + strand, within ABID97_RS06550 at 1385.544 kb on + strand, within ABID97_RS06550 at 1385.544 kb on + strand, within ABID97_RS06550 at 1385.545 kb on - strand, within ABID97_RS06550 at 1385.545 kb on - strand, within ABID97_RS06550 at 1385.545 kb on - strand, within ABID97_RS06550 at 1385.652 kb on + strand, within ABID97_RS06550 at 1385.652 kb on + strand, within ABID97_RS06550 at 1385.905 kb on - strand, within ABID97_RS06550 at 1386.003 kb on + strand, within ABID97_RS06550 at 1386.004 kb on - strand, within ABID97_RS06550 at 1386.004 kb on - strand, within ABID97_RS06550 at 1386.004 kb on - strand, within ABID97_RS06550 at 1386.084 kb on + strand, within ABID97_RS06550 at 1386.085 kb on - strand, within ABID97_RS06550 at 1386.085 kb on - strand, within ABID97_RS06550 at 1386.243 kb on + strand at 1386.243 kb on + strand at 1386.243 kb on + strand at 1386.243 kb on + strand at 1386.244 kb on - strand at 1386.272 kb on + strand at 1386.346 kb on + strand at 1386.424 kb on + strand at 1386.424 kb on + strand at 1386.425 kb on - strand at 1386.425 kb on - strand at 1386.842 kb on - strand at 1386.842 kb on - strand at 1386.842 kb on - strand at 1386.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,383,809 + -0.0 1,383,810 - +0.0 1,384,296 + ABID97_RS06545 0.47 +0.0 1,384,296 + ABID97_RS06545 0.47 +0.4 1,384,296 + ABID97_RS06545 0.47 +0.5 1,384,297 - ABID97_RS06545 0.47 +0.1 1,384,297 - ABID97_RS06545 0.47 -0.1 1,384,297 - ABID97_RS06545 0.47 +0.3 1,384,587 + ABID97_RS06545 0.78 +0.2 1,384,587 + ABID97_RS06545 0.78 +0.9 1,384,587 + ABID97_RS06545 0.78 -1.1 1,384,588 - ABID97_RS06545 0.78 +0.5 1,384,588 - ABID97_RS06545 0.78 +0.4 1,384,588 - ABID97_RS06545 0.78 +0.2 1,384,588 - ABID97_RS06545 0.78 -0.0 1,385,175 + ABID97_RS06550 0.27 -0.1 1,385,176 - ABID97_RS06550 0.27 +0.1 1,385,409 + ABID97_RS06550 0.43 +0.1 1,385,409 + ABID97_RS06550 0.43 -0.4 1,385,410 - ABID97_RS06550 0.43 -0.1 1,385,410 - ABID97_RS06550 0.43 -0.3 1,385,410 - ABID97_RS06550 0.43 -0.1 1,385,544 + ABID97_RS06550 0.51 +0.0 1,385,544 + ABID97_RS06550 0.51 +0.5 1,385,544 + ABID97_RS06550 0.51 -0.5 1,385,544 + ABID97_RS06550 0.51 -0.1 1,385,545 - ABID97_RS06550 0.52 -1.2 1,385,545 - ABID97_RS06550 0.52 -0.2 1,385,545 - ABID97_RS06550 0.52 +2.0 1,385,652 + ABID97_RS06550 0.59 -0.1 1,385,652 + ABID97_RS06550 0.59 -0.6 1,385,905 - ABID97_RS06550 0.75 -0.3 1,386,003 + ABID97_RS06550 0.82 -1.4 1,386,004 - ABID97_RS06550 0.82 -0.2 1,386,004 - ABID97_RS06550 0.82 +0.6 1,386,004 - ABID97_RS06550 0.82 +1.0 1,386,084 + ABID97_RS06550 0.87 -0.1 1,386,085 - ABID97_RS06550 0.87 +0.0 1,386,085 - ABID97_RS06550 0.87 -0.0 1,386,243 + -0.2 1,386,243 + -0.3 1,386,243 + +0.3 1,386,243 + -0.1 1,386,244 - -0.0 1,386,272 + -0.4 1,386,346 + +0.5 1,386,424 + +0.5 1,386,424 + -1.8 1,386,425 - +0.5 1,386,425 - +0.3 1,386,842 - +0.1 1,386,842 - -0.0 1,386,842 - +0.1 1,386,849 - +0.4
Or see this region's nucleotide sequence