Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06255

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06245 and ABID97_RS06250 are separated by 2 nucleotidesABID97_RS06250 and ABID97_RS06255 are separated by 23 nucleotidesABID97_RS06255 and ABID97_RS06260 are separated by 170 nucleotides ABID97_RS06245: ABID97_RS06245 - D-alanine--D-alanine ligase, at 1,319,900 to 1,320,871 _RS06245 ABID97_RS06250: ABID97_RS06250 - cell division protein FtsQ/DivIB, at 1,320,874 to 1,321,663 _RS06250 ABID97_RS06255: ABID97_RS06255 - cell division protein FtsA, at 1,321,687 to 1,322,917 _RS06255 ABID97_RS06260: ABID97_RS06260 - cell division protein FtsZ, at 1,323,088 to 1,324,305 _RS06260 Position (kb) 1321 1322 1323Strain fitness (log2 ratio) -2 -1 0 1at 1320.869 kb on + strandat 1321.662 kb on - strandat 1321.699 kb on + strandat 1321.921 kb on + strand, within ABID97_RS06255at 1322.154 kb on + strand, within ABID97_RS06255at 1322.154 kb on + strand, within ABID97_RS06255at 1322.155 kb on - strand, within ABID97_RS06255at 1322.155 kb on - strand, within ABID97_RS06255at 1322.468 kb on + strand, within ABID97_RS06255at 1322.468 kb on + strand, within ABID97_RS06255at 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,320,869 + -0.8
1,321,662 - +0.5
1,321,699 + -0.9
1,321,921 + ABID97_RS06255 0.19 -0.9
1,322,154 + ABID97_RS06255 0.38 -2.3
1,322,154 + ABID97_RS06255 0.38 -0.1
1,322,155 - ABID97_RS06255 0.38 -0.6
1,322,155 - ABID97_RS06255 0.38 -0.3
1,322,468 + ABID97_RS06255 0.63 -0.3
1,322,468 + ABID97_RS06255 0.63 -1.1
1,323,053 + -0.3
1,323,053 + +0.6
1,323,053 + +0.3

Or see this region's nucleotide sequence