Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05850

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05845 and ABID97_RS05850 are separated by 126 nucleotidesABID97_RS05850 and ABID97_RS05855 are separated by 66 nucleotides ABID97_RS05845: ABID97_RS05845 - SDR family oxidoreductase, at 1,235,096 to 1,235,854 _RS05845 ABID97_RS05850: ABID97_RS05850 - TetR/AcrR family transcriptional regulator, at 1,235,981 to 1,236,679 _RS05850 ABID97_RS05855: ABID97_RS05855 - acyl-CoA dehydrogenase C-terminal domain-containing protein, at 1,236,746 to 1,238,542 _RS05855 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1at 1235.736 kb on - strand, within ABID97_RS05845at 1235.736 kb on - strand, within ABID97_RS05845at 1235.783 kb on + strandat 1235.784 kb on - strandat 1236.124 kb on + strand, within ABID97_RS05850at 1236.329 kb on + strand, within ABID97_RS05850at 1236.329 kb on + strand, within ABID97_RS05850at 1236.329 kb on + strand, within ABID97_RS05850at 1236.330 kb on - strand, within ABID97_RS05850at 1236.521 kb on + strand, within ABID97_RS05850at 1236.521 kb on + strand, within ABID97_RS05850at 1236.522 kb on - strand, within ABID97_RS05850at 1236.751 kb on + strandat 1236.755 kb on + strandat 1236.998 kb on + strand, within ABID97_RS05855at 1236.998 kb on + strand, within ABID97_RS05855at 1237.007 kb on + strand, within ABID97_RS05855at 1237.007 kb on + strand, within ABID97_RS05855at 1237.008 kb on - strand, within ABID97_RS05855at 1237.131 kb on - strand, within ABID97_RS05855at 1237.199 kb on + strand, within ABID97_RS05855at 1237.199 kb on + strand, within ABID97_RS05855at 1237.317 kb on - strand, within ABID97_RS05855at 1237.454 kb on + strand, within ABID97_RS05855at 1237.454 kb on + strand, within ABID97_RS05855at 1237.454 kb on + strand, within ABID97_RS05855at 1237.454 kb on + strand, within ABID97_RS05855at 1237.455 kb on - strand, within ABID97_RS05855at 1237.455 kb on - strand, within ABID97_RS05855

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,235,736 - ABID97_RS05845 0.84 -0.9
1,235,736 - ABID97_RS05845 0.84 -0.8
1,235,783 + -1.5
1,235,784 - -0.2
1,236,124 + ABID97_RS05850 0.20 -0.2
1,236,329 + ABID97_RS05850 0.50 -3.2
1,236,329 + ABID97_RS05850 0.50 -3.7
1,236,329 + ABID97_RS05850 0.50 -2.6
1,236,330 - ABID97_RS05850 0.50 -0.2
1,236,521 + ABID97_RS05850 0.77 -1.5
1,236,521 + ABID97_RS05850 0.77 -0.4
1,236,522 - ABID97_RS05850 0.77 -0.0
1,236,751 + -2.0
1,236,755 + -0.6
1,236,998 + ABID97_RS05855 0.14 -0.4
1,236,998 + ABID97_RS05855 0.14 -0.6
1,237,007 + ABID97_RS05855 0.15 -0.2
1,237,007 + ABID97_RS05855 0.15 -1.6
1,237,008 - ABID97_RS05855 0.15 -0.7
1,237,131 - ABID97_RS05855 0.21 -0.3
1,237,199 + ABID97_RS05855 0.25 -1.0
1,237,199 + ABID97_RS05855 0.25 -0.6
1,237,317 - ABID97_RS05855 0.32 -1.3
1,237,454 + ABID97_RS05855 0.39 -0.7
1,237,454 + ABID97_RS05855 0.39 -0.1
1,237,454 + ABID97_RS05855 0.39 -0.3
1,237,454 + ABID97_RS05855 0.39 -0.6
1,237,455 - ABID97_RS05855 0.39 -0.5
1,237,455 - ABID97_RS05855 0.39 +0.5

Or see this region's nucleotide sequence